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Ptchd3 Gene Detail
Summary
  • Symbol
    Ptchd3
  • Name
    patched domain containing 3
  • Synonyms
    4930451E13Rik, 4933440L20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921925
    NCBI Gene: 74675
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:121830247-121843423 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 87.90 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    83 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921925
protein coding gene Chr11:121830218-121843438 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019554
protein coding gene Chr11:126387447-126400624 (+)
A/J MGP_AJ_G0019521
protein coding gene Chr11:120736719-120749895 (+)
AKR/J MGP_AKRJ_G0019491
protein coding gene Chr11:124404106-124417282 (+)
BALB/cJ MGP_BALBcJ_G0019496
protein coding gene Chr11:121116990-121130166 (+)
C3H/HeJ MGP_C3HHeJ_G0019302
protein coding gene Chr11:124733318-124746494 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019945
protein coding gene Chr11:130217470-130230646 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017570
protein coding gene Chr11:117726185-117739672 (+)
CAST/EiJ MGP_CASTEiJ_G0018856
protein coding gene Chr11:126224669-126238708 (+)
CBA/J MGP_CBAJ_G0019273
protein coding gene Chr11:135282206-135295382 (+)
DBA/2J MGP_DBA2J_G0019386
protein coding gene Chr11:120129247-120142485 (+)
FVB/NJ MGP_FVBNJ_G0019377
protein coding gene Chr11:119853885-119867302 (+)
LP/J MGP_LPJ_G0019457
protein coding gene Chr11:126675719-126688891 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019410
protein coding gene Chr11:134060827-134074003 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019984
protein coding gene Chr11:125097205-125110381 (+)
PWK/PhJ MGP_PWKPhJ_G0018623
protein coding gene Chr11:121560327-121582846 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018414
protein coding gene Chr11:124829555-124856923 (+)
WSB/EiJ MGP_WSBEiJ_G0018909
protein coding gene Chr11:125055975-125069151 (+)



Homology
more
  • Human Ortholog
    PTCHD3, patched domain containing 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PTCHD3, patched domain containing 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PTR
  • Links
    NCBI Gene ID: 374308
    neXtProt AC: NX_Q3KNS1
    UniProt: Q3KNS1

  • Chr Location
    10p12.1; chr10:27398188-27414368 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039198 Ensembl Gene Model | MGI Sequence Detail 13177 C57BL/6J ±  kb
transcript ENSMUST00000036690 Ensembl | MGI Sequence Detail 3194 Not Applicable  
polypeptide ENSMUSP00000035709 Ensembl | MGI Sequence Detail 906 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
Other
Accession IDs
less
MGI:1914032
References
more
  • Summaries
    All 24
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory