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Ptar1 Gene Detail
Summary
  • Symbol
    Ptar1
  • Name
    protein prenyltransferase alpha subunit repeat containing 1
  • Synonyms
    1700084D09Rik, 2010013L17Rik, 4930428J16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921875
    NCBI Gene: 72351
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:23687429-23731668 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 18.45 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    516 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921875
protein coding gene Chr19:23687361-23732885 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024988
protein coding gene Chr19:21860116-21895063 (+)
A/J MGP_AJ_G0024965
protein coding gene Chr19:20664863-20699018 (+)
AKR/J MGP_AKRJ_G0024935
protein coding gene Chr19:21464652-21500583 (+)
BALB/cJ MGP_BALBcJ_G0024964
protein coding gene Chr19:20704502-20738854 (+)
C3H/HeJ MGP_C3HHeJ_G0024721
protein coding gene Chr19:21410830-21444553 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025405
protein coding gene Chr19:22556074-22593392 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022824
protein coding gene Chr19:20843965-20878017 (+)
CAST/EiJ MGP_CASTEiJ_G0024190
protein coding gene Chr19:21147443-21182319 (+)
CBA/J MGP_CBAJ_G0024699
protein coding gene Chr19:23541431-23575190 (+)
DBA/2J MGP_DBA2J_G0024831
protein coding gene Chr19:20673631-20707679 (+)
FVB/NJ MGP_FVBNJ_G0024792
protein coding gene Chr19:20533434-20568758 (+)
LP/J MGP_LPJ_G0024915
protein coding gene Chr19:21806197-21841141 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024819
protein coding gene Chr19:23598419-23637233 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025460
protein coding gene Chr19:21446696-21481670 (+)
PWK/PhJ MGP_PWKPhJ_G0023938
protein coding gene Chr19:20263041-20297644 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023743
protein coding gene Chr19:20678887-20712843 (+)
WSB/EiJ MGP_WSBEiJ_G0024257
protein coding gene Chr19:21479912-21516514 (+)



Homology
more
  • Human Ortholog
    PTAR1, protein prenyltransferase alpha subunit repeat containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PTAR1, protein prenyltransferase alpha subunit repeat containing 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 375743
    neXtProt AC: NX_Q7Z6K3
    UniProt: Q7Z6K3

  • Chr Location
    9q21.12; chr9:69709522-69760050 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 34254
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PTAR1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074925 Ensembl Gene Model | MGI Sequence Detail 44240 C57BL/6J ±  kb
transcript ENSMUST00000237333 Ensembl | MGI Sequence Detail 12574 Not Applicable  
polypeptide ENSMUSP00000157782 Ensembl | MGI Sequence Detail 424 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 7
Other
Accession IDs
less
MGI:1919601, MGI:1920771, MGI:2147543
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:271120 Scavuzzo MA, et al., Pancreatic Cell Fate Determination Relies on Notch Ligand Trafficking by NFIA. Cell Rep. 2018 Dec 26;25(13):3811-3827.e7

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/24/2020
MGI 6.15
The Jackson Laboratory