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Zkscan1 Gene Detail
Summary
  • Symbol
    Zkscan1
  • Name
    zinc finger with KRAB and SCAN domains 1
  • Synonyms
    5930429A01Rik, 9130423L19Rik, 9230118B16Rik, KOX18, MGC:63357
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921820
    NCBI Gene: 74570
  • Gene Overview
    MyGene.info: ZKSCAN1
Location & Maps
more
  • Sequence Map
    Chr5:138085084-138107822 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      22739 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 76.95 cM, cytoband G1
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    ZKSCAN1, zinc finger with KRAB and SCAN domains 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    ZKSCAN1, zinc finger with KRAB and SCAN domains 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    9130423L19Rik, KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33
  • Links
    NCBI Gene ID: 7586
    neXtProt AC: NX_P17029

  • Chr Location
    7q22; chr7:100015572-100045143 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    34
  • Gene trapped
    33
  • Targeted
    1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022628 VEGA Gene Model | MGI Sequence Detail 22739 C57BL/6J ±  kb
transcript OTTMUST00000054207 VEGA | MGI Sequence Detail 8261 Not Applicable  
polypeptide OTTMUSP00000025839 VEGA | MGI Sequence Detail 561 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    142 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000017673 zinc finger protein with KRAB and SCAN domains 1
  • InterPro Domains
    IPR001909 Krueppel-associated box
    IPR008916 Retrovirus capsid, C-terminal
    IPR003309 SCAN domain
    IPR007087 Zinc finger, C2H2
    IPR015880 Zinc finger, C2H2-like
    IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular
Reagents
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  • All nucleic 27
    cDNA 26
    Primer pair 1

    Microarray probesets 10
Other
Accession IDs
less
MGI:1924361, MGI:1925002, MGI:2140946, MGI:2140960, MGI:2141340
References
more
  • Summaries
    All 40
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:214067 Liang D, et al., Short intronic repeat sequences facilitate circular RNA production. Genes Dev. 2014 Oct 3;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory