About   Help   FAQ
Zkscan1 Gene Detail
Summary
  • Symbol
    Zkscan1
  • Name
    zinc finger with KRAB and SCAN domains 1
  • Synonyms
    5930429A01Rik, 9130423L19Rik, 9230118B16Rik, KOX18, MGC:63357
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921820
    NCBI Gene: 74570
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:138083346-138106084 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 76.95 cM, cytoband G1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    592 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921820
 protein coding gene Chr5:138083312-138106084 (+)
129S1/SvImJ ENSMUSG00200041098
 protein coding gene Chr5:131896185-131918920 (+)
A/J ENSMUSG00195045992
 protein coding gene Chr5:131369406-131392781 (+)
AKR/J ENSMUSG00220045460
 protein coding gene Chr5:130834108-130856843 (+)
BALB/cJ ENSMUSG00180037415
 protein coding gene Chr5:131465983-131489360 (+)
C3H/HeJ ENSMUSG00175040222
 protein coding gene Chr5:133393471-133416843 (+)
C57BL/6NJ ENSMUSG00215045423
 protein coding gene Chr5:131527010-131549752 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027900
 protein coding gene Chr5:130832578-130856500 (+)
CAST/EiJ ENSTCUG00005008828
 protein coding gene Chr5:130714295-130737267 (+)
CBA/J ENSMUSG00210023790
 protein coding gene Chr5:132211019-132234392 (+)
DBA/2J ENSMUSG00185052093
 protein coding gene Chr5:135226349-135249722 (+)
FVB/NJ ENSMUSG00205031528
 protein coding gene Chr5:131110089-131133464 (+)
JF1/MsJ ENSUMUG00000049954
 protein coding gene Chr5:138095346-138118274 (+)
LP/J ENSMUSG00230044845
 protein coding gene Chr5:139339819-139363191 (+)
NOD/ShiLtJ ENSMUSG00190045664
 protein coding gene Chr5:131165655-131189027 (+)
NZO/HlLtJ ENSMUSG00225022836
 protein coding gene Chr5:147012857-147035585 (+)
PWK/PhJ ENSLUMG00010014092
 protein coding gene Chr5:129969057-129992419 (+)
SPRET/EiJ ENSMSPG00010029400
 protein coding gene Chr5:133339849-133362573 (+)
WSB/EiJ ENSIUOG00005035587
 protein coding gene Chr5:133812588-133835526 (+)



Homology
more
  • Human Ortholog
    ZKSCAN1, zinc finger with KRAB and SCAN domains 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZKSCAN1, zinc finger with KRAB and SCAN domains 1
  • Synonyms
    KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33
  • Links
    NCBI Gene ID: 7586
    UniProt: P17029

  • Chr Location
    7q22.1; chr7:100015570-100045374 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    701
  • Tissues
    38
  • cDNA Data
    25
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029729 Ensembl Gene Model | MGI Sequence Detail 22739 C57BL/6J ±  kb
transcript ENSMUST00000019660 Ensembl | MGI Sequence Detail 8261 Not Applicable  
polypeptide ENSMUSP00000019660 Ensembl | MGI Sequence Detail 561 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    cDNA 27
    Primer pair 1

    Microarray probesets 10
Other
Accession IDs
less
MGI:1924361, MGI:1925002, MGI:2140946, MGI:2140960, MGI:2141340
References
more
  • Summaries
    All 47
    Developmental Gene Expression 5
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory