About   Help   FAQ
Lrrc17 Gene Detail
Summary
  • Symbol
    Lrrc17
  • Name
    leucine rich repeat containing 17
  • Synonyms
    37kDa, 4833425M04Rik, 6130400C22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921761
    NCBI Gene: 74511
  • Gene Overview
    MyGene.info: LRRC17
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:21543559-21575904 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 9.89 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    325 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921761
protein coding gene Chr5:21543527-21575911 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029319
protein coding gene Chr5:19097803-19129698 (+)
A/J MGP_AJ_G0029284
protein coding gene Chr5:18480950-18514235 (+)
AKR/J MGP_AKRJ_G0029235
protein coding gene Chr5:19183089-19215371 (+)
BALB/cJ MGP_BALBcJ_G0029296
protein coding gene Chr5:18918561-18952334 (+)
C3H/HeJ MGP_C3HHeJ_G0029015
protein coding gene Chr5:19253451-19287812 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029749
protein coding gene Chr5:20504504-20538354 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026988
protein coding gene Chr5:16538501-16570599 (+)
CAST/EiJ MGP_CASTEiJ_G0028427
protein coding gene Chr5:18576537-18614105 (+)
CBA/J MGP_CBAJ_G0028982
protein coding gene Chr5:20714255-20751595 (+)
DBA/2J MGP_DBA2J_G0029134
protein coding gene Chr5:18765109-18797725 (+)
FVB/NJ MGP_FVBNJ_G0029092
protein coding gene Chr5:18171525-18205493 (+)
LP/J MGP_LPJ_G0029218
protein coding gene Chr5:19512285-19544216 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029120
protein coding gene Chr5:22013765-22046065 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029782
protein coding gene Chr5:18845119-18878890 (+)
PWK/PhJ MGP_PWKPhJ_G0028150
protein coding gene Chr5:17813331-17845574 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027983
protein coding gene Chr5:18205178-18241850 (+)
WSB/EiJ MGP_WSBEiJ_G0028507
protein coding gene Chr5:18904374-18937486 (+)



Homology
more
  • Human Ortholog
    LRRC17, leucine rich repeat containing 17
  • Vertebrate Orthologs
    10
  • Human Ortholog
    LRRC17, leucine rich repeat containing 17
    Orthology source: HomoloGene, HGNC
  • Synonyms
    P37NB
  • Links
    NCBI Gene ID: 10234
    neXtProt AC: NX_Q8N6Y2
    UniProt: Q8N6Y2

  • Chr Location
    7q22.1; chr7:102912897-102945111 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 55929
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: LRRC17
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from multigenic genotypes
    11 phenotype references
Mice homozygous for a targeted allele exhibit normal phenotype.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039883 Ensembl Gene Model | MGI Sequence Detail 32346 C57BL/6J ±  kb
transcript ENSMUST00000035651 Ensembl | MGI Sequence Detail 2154 Not Applicable  
polypeptide ENSMUSP00000038569 Ensembl | MGI Sequence Detail 443 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 52
    Genomic 1
    cDNA 50
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1921859
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:217538 Lui JH, et al., Radial glia require PDGFD-PDGFRbeta signalling in human but not mouse neocortex. Nature. 2014 Nov 13;515(7526):264-8

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory