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Rbm31y Gene Detail
Summary
  • Symbol
    Rbm31y
  • Name
    RNA binding motif 31, Y-linked
  • Synonyms
    4933434H11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921734
    NCBI Gene: 74484
  • Alliance
Location &
Maps
more
  • Sequence Map
    ChrY:17400761-17402715 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome Y, Syntenic
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921734
protein coding gene ChrY:17400761-17402718 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036052
protein coding gene ChrX:125416539-125418402 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0036026
protein coding gene ChrX:123335316-123337179 (+)
C3H/HeJ MGP_C3HHeJ_G0035730
protein coding gene ChrX:125528539-125530402 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036548
protein coding gene ChrX:129093993-129095856 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033376
protein coding gene ChrX:117441261-117443132 (+)
CAST/EiJ MGP_CASTEiJ_G0035017
protein coding gene ChrX:106555713-106557574 (+)
CBA/J MGP_CBAJ_G0035707
protein coding gene ChrX:132907408-132909271 (+)
DBA/2J MGP_DBA2J_G0035860
protein coding gene ChrX:124260510-124262373 (+)
FVB/NJ MGP_FVBNJ_G0035802
protein coding gene ChrX:123568016-123569879 (+)
LP/J MGP_LPJ_G0035953
protein coding gene ChrX:126248023-126249886 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035830
protein coding gene ChrX:139678450-139680313 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036577
protein coding gene ChrX:124869787-124871650 (+)
PWK/PhJ MGP_PWKPhJ_G0034709
protein coding gene ChrX:103583475-103585338 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034541
protein coding gene ChrX:107019308-107021166 (+)
WSB/EiJ MGP_WSBEiJ_G0035154
protein coding gene ChrX:123380940-123382801 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000095365 Ensembl Gene Model | MGI Sequence Detail 1955 C57BL/6J ±  kb
transcript ENSMUST00000179408 Ensembl | MGI Sequence Detail 1955 Not Applicable  
polypeptide ENSMUSP00000136781 Ensembl | MGI Sequence Detail 565 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:250379 Fischer M, et al., Large deletion on the Y-chromosome long arm (Yq) of C57BL/6JBomTac inbred mice. Mamm Genome. 2017 Feb;28(1-2):31-37

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/24/2020
MGI 6.15
The Jackson Laboratory