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Ankhd1 Gene Detail
Summary
  • Symbol
    Ankhd1
  • Name
    ankyrin repeat and KH domain containing 1
  • Synonyms
    1110004O12Rik, 4933432B13Rik, 9130019P20Rik, A530027J04Rik, mKIAA1085
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921733
    NCBI Gene: 108857
Location & Maps
more
  • Sequence Map
    Chr18:36559987-36665917 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      105931 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.46 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    ANKHD1, ankyrin repeat and KH domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ANKHD1, ankyrin repeat and KH domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MASK, MASK1, PP2500, VBARP
  • Links
    NCBI Gene ID: 54882
    neXtProt AC: NX_Q8IWZ3

  • Chr Location
    5q31.3; chr5:140401814-140539856 (+)  GRCh38.p2

  • Human Ortholog
    ANKHD1-EIF4EBP3, ANKHD1-EIF4EBP3 readthrough
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MASK-BP3, MASK-BP3ARF
  • Links
    NCBI Gene ID: 404734
    neXtProt AC: NX_Q8IWZ3

  • Chr Location
    5q31.3; chr5:140401814-140549578 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034846 VEGA Gene Model | MGI Sequence Detail 105931 C57BL/6J ±  kb
transcript OTTMUST00000090529 VEGA | MGI Sequence Detail 8223 Not Applicable  
polypeptide OTTMUSP00000049690 VEGA | MGI Sequence Detail 2548 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    353 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 126
    cDNA 125
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1918845, MGI:1919033, MGI:2145573, MGI:2443427
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/27/2016
MGI 6.05
The Jackson Laboratory