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Snx29 Gene Detail
Summary
  • Symbol
    Snx29
  • Name
    sorting nexin 29
  • Synonyms
    4933437K13Rik, Gm11170, LOC381035, LOC385605, Rundc2a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921728
    NCBI Gene: 74478
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:11322908-11755472 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 6.46 cM, cytoband B1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2495 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921728
protein coding gene Chr16:11321876-11755931 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022525
protein coding gene Chr16:8202917-8658467 (+)
A/J MGP_AJ_G0022487
protein coding gene Chr16:7741647-8168007 (+)
AKR/J MGP_AKRJ_G0022463
protein coding gene Chr16:8105306-8550102 (+)
BALB/cJ MGP_BALBcJ_G0022491
protein coding gene Chr16:7885563-8311327 (+)
C3H/HeJ MGP_C3HHeJ_G0022258
protein coding gene Chr16:8171717-8614422 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022940
protein coding gene Chr16:8363206-8797358 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020460
protein coding gene Chr16:7903051-8321649 (+)
CAST/EiJ MGP_CASTEiJ_G0021785
protein coding gene Chr16:8203691-8645228 (+)
CBA/J MGP_CBAJ_G0022227
protein coding gene Chr16:8718163-9206510 (+)
DBA/2J MGP_DBA2J_G0022358
protein coding gene Chr16:7748704-8186246 (+)
FVB/NJ MGP_FVBNJ_G0022334
protein coding gene Chr16:7738551-8169873 (+)
LP/J MGP_LPJ_G0022426
protein coding gene Chr16:8138519-8580723 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022356
protein coding gene Chr16:8414491-8874016 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022953
protein coding gene Chr16:8046832-8497415 (+)
PWK/PhJ MGP_PWKPhJ_G0021525
protein coding gene Chr16:7985177-8410937 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021355
protein coding gene Chr16:8108674-8542068 (+)
WSB/EiJ MGP_WSBEiJ_G0021833
protein coding gene Chr16:8128174-8577594 (+)



Homology
more
  • Human Ortholog
    SNX29, sorting nexin 29
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNX29, sorting nexin 29
    Orthology source: HomoloGene, HGNC
  • Synonyms
    A-388D4.1, RUNDC2A
  • Links
    NCBI Gene ID: 92017
    neXtProt AC: NX_Q8TEQ0
    UniProt: Q8TEQ0

  • Chr Location
    16p13.13-p13.12; chr16:11976734-12574289 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 32706
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNX29
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000071669 Ensembl Gene Model | MGI Sequence Detail 432565 C57BL/6J ±  kb
transcript ENSMUST00000180792 Ensembl | MGI Sequence Detail 2667 Not Applicable  
polypeptide ENSMUSP00000138025 Ensembl | MGI Sequence Detail 818 Not Applicable  
For the selected sequence
Protein
Information
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Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 4
Other
Accession IDs
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MGI:2685776, MGI:2686583, MGI:3779425
References
more
  • Summaries
    All 32
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/15/2019
MGI 6.13
The Jackson Laboratory