About   Help   FAQ
Zswim5 Gene Detail
Summary
  • Symbol
    Zswim5
  • Name
    zinc finger SWIM-type containing 5
  • Synonyms
    4933426E21Rik, mKIAA1511
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921714
    NCBI Gene: 74464
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:116877402-116989105 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 53.37 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    326 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921714
protein coding gene Chr4:116877376-116989264 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028638
protein coding gene Chr4:117820404-117936379 (+)
A/J MGP_AJ_G0028599
protein coding gene Chr4:113283359-113392727 (+)
AKR/J MGP_AKRJ_G0028549
protein coding gene Chr4:115751134-115867903 (+)
BALB/cJ MGP_BALBcJ_G0028620
protein coding gene Chr4:113911135-114022722 (+)
C3H/HeJ MGP_C3HHeJ_G0028334
protein coding gene Chr4:117318592-117432171 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029061
protein coding gene Chr4:122361222-122481669 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026345
protein coding gene Chr4:107330524-107439840 (+)
CAST/EiJ MGP_CASTEiJ_G0027768
protein coding gene Chr4:114540171-114651650 (+)
CBA/J MGP_CBAJ_G0028301
protein coding gene Chr4:125700848-125828835 (+)
DBA/2J MGP_DBA2J_G0028449
protein coding gene Chr4:113919093-114029128 (+)
FVB/NJ MGP_FVBNJ_G0028417
protein coding gene Chr4:112417707-112532113 (+)
LP/J MGP_LPJ_G0028551
protein coding gene Chr4:118002637-118118040 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028444
protein coding gene Chr4:130664712-130784570 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029098
protein coding gene Chr4:116896441-117016381 (+)
PWK/PhJ MGP_PWKPhJ_G0027494
protein coding gene Chr4:110698938-110815114 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027317
protein coding gene Chr4:113186386-113306847 (+)
WSB/EiJ MGP_WSBEiJ_G0027847
protein coding gene Chr4:116765442-116885662 (+)



Homology
more
  • Human Ortholog
    ZSWIM5, zinc finger SWIM-type containing 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ZSWIM5, zinc finger SWIM-type containing 5
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 57643
    neXtProt AC: NX_Q9P217
    UniProt: Q9P217

  • Chr Location
    1p34.1; chr1:45016399-45206586 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 18958
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ZSWIM5
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 74464 NCBI Gene Model | MGI Sequence Detail 111704 C57BL/6J ±  kb
    transcript NM_001029912 RefSeq | MGI Sequence Detail 5397 C57BL/6  
    polypeptide Q80TC6 UniProt | EBI | MGI Sequence Detail 1188 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 11
      Genomic 2
      cDNA 6
      Primer pair 2
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2140314
    References
    more
    • Summaries
      All 39
      Developmental Gene Expression 2
      Gene Ontology 3
      Phenotypes 13
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:259070 Tischfield DJ, et al., Loss of the neurodevelopmental gene Zswim6 alters striatal morphology and motor regulation. Neurobiol Dis. 2017 Jul;103:174-183

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    08/13/2019
    MGI 6.14
    The Jackson Laboratory