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Cfap53
Gene Detail
Symbol

Name
ID
Cfap53
cilia and flagella associated protein 53
MGI:1921703
Synonyms
4933415I03Rik, Ccdc11
Feature Type
protein coding gene
Genetic Map
Chromosome 18
50.70 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:74283090-74359986 bp, + strand
From VEGA annotation of GRCm38

  76897 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:27056  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: CFAP53
Gene Tree: Cfap53

Human
homologs
CFAP53, cilia and flagella associated protein 53
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 220136
neXtProt AC: NX_Q96M91

Human Synonyms: CCDC11, HTX6

Human Chr (Location): 18q21.1; chr18:50227193-50266495 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human CFAP53

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Targeted(5)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Cfap53 interacts with 243 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cell projection
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(11)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase cfap53    NEW 
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000039801 (Evidence)
Ensembl Gene Model ENSMUSG00000035394 (Evidence)
Entrez Gene 74453 (Evidence)
UniGene 182293
DFCI TC1586916
DoTS DT.55243355, DT.99853447
NIA Mouse Gene Index U018893
Consensus CDS Project CCDS37857.2
International Mouse Phenotyping Consortium Status Cfap53
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000039801 VEGA Gene Model | MGI Sequence Detail 76897 C57BL/6J ±  kb
transcript OTTMUST00000103460 VEGA | MGI Sequence Detail 1888 Not Applicable 
polypeptide OTTMUSP00000057809 VEGA | MGI Sequence Detail 514 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(5) UniProt(4)
Polymorphisms
SNPs within 2kb(686 from dbSNP Build 137)    SNPs within 2kb including multiple locations(690)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000031884 coiled-coil domain-containing protein 11
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory