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Ccdc11
Gene Detail
 Symbol
Name
ID
Ccdc11
coiled-coil domain containing 11
MGI:1921703
Synonyms 4933415I03Rik
Feature Type protein coding gene
Genetic Map
Chromosome 18
50.70 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:74283090-74359986 bp, + strand
From VEGA annotation of GRCm38

  76897 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:27056  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 western clawed frog; 2 zebrafish

Gene Tree: Ccdc11

Human
homologs
Human Homolog CCDC11, coiled-coil domain containing 11
NCBI Gene ID 220136
neXtProt AC  NX_Q96M91
Human Synonyms  HTX6
Human Chr (Location)  18q21.1; chr18:50227193-50266495 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human CCDC11
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ccdc11 interacts with 244 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(11)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000039801 (Evidence)
Ensembl Gene ModelENSMUSG00000035394 (Evidence)
Entrez Gene74453 (Evidence)
UniGene182293
DFCITC1586916
DoTSDT.55243355, DT.99853447
NIA Mouse Gene IndexU018893
Consensus CDS ProjectCCDS37857.2
International Mouse Knockout Project StatusCcdc11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000039801 VEGA Gene Model | MGI Sequence Detail 76897 C57BL/6J ±  kb
transcript OTTMUST00000103460 VEGA | MGI Sequence Detail 1888 Not Applicable 
polypeptide OTTMUSP00000057809 VEGA | MGI Sequence Detail 514 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(5) UniProt(4)
Polymorphisms SNPs within 2kb(686 from dbSNP Build 137)    SNPs within 2kb including multiple locations(690)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000031884 coiled-coil domain-containing protein 11
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(26)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory