4933406P04Rik Gene Detail

Summary

• Symbol
  4933406P04Rik
• Name
  RIKEN cDNA 4933406P04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921670
  NCBI Gene: 74420
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:20186242-20188595 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 9.75 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921670	lncRNA gene	Chr10:20186242-20188595 (-)
129S1/SvImJ	ENSMUSG00200011052	lncRNA gene	Chr10:17178168-17179995 (-)
129S1/SvImJ	ENSMUSG00200009653	protein coding gene	Chr10:17177113-17180569 (-)
A/J	ENSMUSG00195006307	protein coding gene	Chr10:17187417-17192616 (-)
A/J	ENSMUSG00195006808	lncRNA gene	Chr10:17190215-17192042 (-)
AKR/J	ENSMUSG00220010092	protein coding gene	Chr10:17096502-17101702 (-)
AKR/J	ENSMUSG00220010345	lncRNA gene	Chr10:17099301-17101128 (-)
BALB/cJ	ENSMUSG00180014856	protein coding gene	Chr10:17311639-17316838 (-)
BALB/cJ	ENSMUSG00180015371	lncRNA gene	Chr10:17314437-17316264 (-)
C3H/HeJ	ENSMUSG00175020609	lncRNA gene	Chr10:17334256-17336083 (-)
C3H/HeJ	ENSMUSG00175019936	protein coding gene	Chr10:17331458-17336657 (-)
C57BL/6NJ	ENSMUSG00215003865	lncRNA gene	Chr10:17141005-17142831 (-)
C57BL/6NJ	ENSMUSG00215003407	protein coding gene	Chr10:17138206-17143358 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015156	protein coding gene	Chr10:16361316-16363087 (-)
CAST/EiJ	ENSTCUG00005030904	lncRNA gene	Chr10:17105959-17107786 (-)
CBA/J	ENSMUSG00210015387	protein coding gene	Chr10:17268252-17273403 (-)
CBA/J	ENSMUSG00210015781	lncRNA gene	Chr10:17271050-17272876 (-)
DBA/2J	ENSMUSG00185006460	protein coding gene	Chr10:17253603-17258801 (-)
DBA/2J	ENSMUSG00185008174	lncRNA gene	Chr10:17256400-17258227 (-)
FVB/NJ	ENSMUSG00205017406	protein coding gene	Chr10:17177089-17182247 (-)
FVB/NJ	ENSMUSG00205020201	lncRNA gene	Chr10:17179888-17181714 (-)
JF1/MsJ	ENSUMUG00000014779	lncRNA gene	Chr10:17310716-17312545 (-)
LP/J	ENSMUSG00230015850	protein coding gene	Chr10:18909502-18914700 (-)
LP/J	ENSMUSG00230018583	lncRNA gene	Chr10:18912299-18914126 (-)
NOD/ShiLtJ	ENSMUSG00190010898	lncRNA gene	Chr10:17251656-17253482 (-)
NOD/ShiLtJ	ENSMUSG00190010600	protein coding gene	Chr10:17248857-17254015 (-)
NZO/HlLtJ	ENSMUSG00225030538	lncRNA gene	Chr10:23397087-23398913 (-)
NZO/HlLtJ	ENSMUSG00225029460	protein coding gene	Chr10:23394289-23399440 (-)
PWK/PhJ	ENSLUMG00010015713	lncRNA gene	Chr10:17072912-17074741 (-)
SPRET/EiJ	ENSMSPG00010011267	lncRNA gene	Chr10:17705208-17707056 (-)
WSB/EiJ	ENSIUOG00005024577	lncRNA gene	Chr10:16879049-16880876 (-)

Homology

• Gene Tree
  4933406P04Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• UniProt
  1

• Ensembl
  ENSMUSG00000069713 (Evidence)
• NCBI Gene
  74420

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069713	Ensembl Gene Model | MGI Sequence Detail	2354	C57BL/6J
transcript	ENSMUST00000092680	Ensembl | MGI Sequence Detail	2354	Not Applicable
polypeptide	Q9D488	UniProt | EBI | MGI Sequence Detail	108	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933406P04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96944	Chr10:20187985-20188024 (-)	590 bp