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Ddx23 Gene Detail
Summary
  • Symbol
    Ddx23
  • Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
  • Synonyms
    3110082M05Rik, 4921506D17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921601
    NCBI Gene: 74351
  • Gene Overview
    MyGene.info: DDX23
Location & Maps
more
  • Sequence Map
    Chr15:98645134-98662889 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      17756 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 54.65 cM, cytoband F2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    DDX23, DEAD-box helicase 23
  • Vertebrate Orthologs
    9
  • Human Ortholog
    DDX23, DEAD-box helicase 23
    Orthology source: HomoloGene, HGNC
  • Synonyms
    prp28, PRPF28, SNRNP100, U5-100K, U5-100KD
  • Links
    NCBI Gene ID: 9416
    neXtProt AC: NX_Q9BUQ8

  • Chr Location
    12q13.12; chr12:48829756-48852174 (-)  GRCh38.p2

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    28 phenotype references
  • All Mutations and Alleles
    17
  • Chemically induced (other)
    1
  • Gene trapped
    12
  • Radiation induced
    2
  • Targeted
    2
  • Genomic Mutations
    3 involving Ddx23
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Other Mouse Links
  • Other Vertebrate Links
    Xenbase ddx23
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034981 VEGA Gene Model | MGI Sequence Detail 17756 C57BL/6J ±  kb
transcript OTTMUST00000088958 VEGA | MGI Sequence Detail 3187 Not Applicable  
polypeptide OTTMUSP00000048555 VEGA | MGI Sequence Detail 819 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    145 from dbSNP Build 142
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site
    IPR011545 DEAD/DEAH box helicase domain
    IPR001650 Helicase, C-terminal
    IPR014001 Helicase superfamily 1/2, ATP-binding domain
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR014014 RNA helicase, DEAD-box type, Q motif
Molecular
Reagents
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  • All nucleic 6
    cDNA 6

    Microarray probesets 4
Other
Accession IDs
less
MGI:1920476
References
more
  • Summaries
    All 30
    Diseases 1
    Gene Ontology 3
    Phenotypes 28
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory