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Slx4ip Gene Detail
Summary
  • Symbol
    Slx4ip
  • Name
    SLX4 interacting protein
  • Synonyms
    2210009G21Rik, 2410004I22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921493
    NCBI Gene: 74243
  • Gene Overview
    MyGene.info: SLX4IP
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:136891218-137071950 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 67.65 cM, cytoband G1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    779 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921493
protein coding gene Chr2:136891213-137081351 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026561
protein coding gene Chr2:140681033-140861156 (+)
A/J MGP_AJ_G0026525
protein coding gene Chr2:134980523-135149185 (+)
AKR/J MGP_AKRJ_G0026499
protein coding gene Chr2:138851575-139031663 (+)
BALB/cJ MGP_BALBcJ_G0026537
protein coding gene Chr2:135359970-135535574 (+)
C3H/HeJ MGP_C3HHeJ_G0026280
protein coding gene Chr2:139301828-139485087 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026982
protein coding gene Chr2:144900065-145090127 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024359
protein coding gene Chr2:129517941-129678905 (+)
CAST/EiJ MGP_CASTEiJ_G0025741
protein coding gene Chr2:139680089-139861320 (+)
CBA/J MGP_CBAJ_G0026260
protein coding gene Chr2:150301161-150493645 (+)
DBA/2J MGP_DBA2J_G0026394
protein coding gene Chr2:134342465-134521189 (+)
FVB/NJ MGP_FVBNJ_G0026358
protein coding gene Chr2:132925132-133104327 (+)
LP/J MGP_LPJ_G0026498
protein coding gene Chr2:140849199-141021942 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026378
protein coding gene Chr2:154114138-154313042 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027037
protein coding gene Chr2:138855642-139038692 (+)
PWK/PhJ MGP_PWKPhJ_G0025477
protein coding gene Chr2:133962221-134137940 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025279
protein coding gene Chr2:137965963-138137822 (+)
WSB/EiJ MGP_WSBEiJ_G0025815
protein coding gene Chr2:139764316-139952651 (+)



Homology
more
  • Human Ortholog
    SLX4IP, SLX4 interacting protein
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SLX4IP, SLX4 interacting protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA204H22.1, bA254M13.1, C20orf94, dJ1099D15.3
  • Links
    NCBI Gene ID: 128710
    neXtProt AC: NX_Q5VYV7
    UniProt: Q5VYV7

  • Chr Location
    20p12.2; chr20:10434453-10628138 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotype references
  • All Mutations and Alleles
    25
  • Chemically induced (other)
    1
  • Gene trapped
    19
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Slx4ip
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027281 Ensembl Gene Model | MGI Sequence Detail 180733 C57BL/6J ±  kb
transcript ENSMUST00000180277 Ensembl | MGI Sequence Detail 2723 Not Applicable  
polypeptide ENSMUSP00000136131 Ensembl | MGI Sequence Detail 413 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR031479 Protein SLX4IP
Molecular
Reagents
less
  • All nucleic 51
    Genomic 1
    cDNA 50

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919578, MGI:2142868
References
more
  • Summaries
    All 53
    Diseases 1
    Phenotypes 32
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:198682 Leo D, et al., Transgenic mouse models for ADHD. Cell Tissue Res. 2013 Oct;354(1):259-71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/13/2020
MGI 6.16
The Jackson Laboratory