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Slx4ip Gene Detail
Summary
  • Symbol
    Slx4ip
  • Name
    SLX4 interacting protein
  • Synonyms
    2210009G21Rik, 2410004I22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921493
    NCBI Gene: 74243
  • Gene Overview
    MyGene.info: SLX4IP
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:136891218-137071950 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 67.65 cM, cytoband G1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    779 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921493
protein coding gene Chr2:136891218-137081351 (.)
129S1/SvImJ MGP_129S1SvImJ_G0026561
protein coding gene Chr2:140681033-140861156 (+)
A/J MGP_AJ_G0026525
protein coding gene Chr2:134980523-135149185 (+)
AKR/J MGP_AKRJ_G0026499
protein coding gene Chr2:138851575-139031663 (+)
BALB/cJ MGP_BALBcJ_G0026537
protein coding gene Chr2:135359970-135535574 (+)
C3H/HeJ MGP_C3HHeJ_G0026280
protein coding gene Chr2:139301828-139485087 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026982
protein coding gene Chr2:144900065-145090127 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024359
protein coding gene Chr2:129517941-129678905 (+)
CAST/EiJ MGP_CASTEiJ_G0025741
protein coding gene Chr2:139680089-139861320 (+)
CBA/J MGP_CBAJ_G0026260
protein coding gene Chr2:150301161-150493645 (+)
DBA/2J MGP_DBA2J_G0026394
protein coding gene Chr2:134342465-134521189 (+)
FVB/NJ MGP_FVBNJ_G0026358
protein coding gene Chr2:132925132-133104327 (+)
LP/J MGP_LPJ_G0026498
protein coding gene Chr2:140849199-141021942 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026378
protein coding gene Chr2:154114138-154313042 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027037
protein coding gene Chr2:138855642-139038692 (+)
PWK/PhJ MGP_PWKPhJ_G0025477
protein coding gene Chr2:133962221-134137940 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025279
protein coding gene Chr2:137965963-138137822 (+)
WSB/EiJ MGP_WSBEiJ_G0025815
protein coding gene Chr2:139764316-139952651 (+)



Homology
more
  • Human Ortholog
    SLX4IP, SLX4 interacting protein
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SLX4IP, SLX4 interacting protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA204H22.1, bA254M13.1, C20orf94, dJ1099D15.3
  • Links
    NCBI Gene ID: 128710
    neXtProt AC: NX_Q5VYV7
    UniProt: Q5VYV7

  • Chr Location
    20p12.2; chr20:10434453-10628138 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    32 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    24
  • Chemically induced (other)
    1
  • Gene trapped
    19
  • Radiation induced
    2
  • Targeted
    2
  • Genomic Mutations
    3 involving Slx4ip
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027281 Ensembl Gene Model | MGI Sequence Detail 180733 C57BL/6J ±  kb
transcript ENSMUST00000099311 Ensembl | MGI Sequence Detail 5089 Not Applicable  
polypeptide ENSMUSP00000096914 Ensembl | MGI Sequence Detail 413 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR031479 Protein SLX4IP
Molecular
Reagents
less
  • All nucleic 51
    Genomic 1
    cDNA 50

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919578, MGI:2142868
References
more
  • Summaries
    All 53
    Diseases 1
    Phenotypes 32
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:198682 Leo D, et al., Transgenic mouse models for ADHD. Cell Tissue Res. 2013 Oct;354(1):259-71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory