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Khdc4 Gene Detail
Summary
  • Symbol
    Khdc4
  • Name
    KH domain containing 4, pre-mRNA splicing factor
  • Synonyms
    2810403A07Rik, A430106P18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921450
    NCBI Gene: 74200
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:88685803-88712924 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 38.93 cM, cytoband F1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    120 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921450
protein coding gene Chr3:88685780-88712933 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027406
protein coding gene Chr3:88869088-88900896 (+)
A/J MGP_AJ_G0027370
protein coding gene Chr3:85857889-85884898 (+)
AKR/J MGP_AKRJ_G0027334
protein coding gene Chr3:87977556-88004532 (+)
BALB/cJ MGP_BALBcJ_G0027379
protein coding gene Chr3:85943582-85974536 (+)
C3H/HeJ MGP_C3HHeJ_G0027121
protein coding gene Chr3:88237245-88264058 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027825
protein coding gene Chr3:92167662-92195874 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025177
protein coding gene Chr3:81465983-81493715 (+)
CAST/EiJ MGP_CASTEiJ_G0026567
protein coding gene Chr3:88471427-88504948 (+)
CBA/J MGP_CBAJ_G0027095
protein coding gene Chr3:95337357-95364407 (+)
DBA/2J MGP_DBA2J_G0027233
protein coding gene Chr3:85348147-85375363 (+)
FVB/NJ MGP_FVBNJ_G0027201
protein coding gene Chr3:83612638-83639541 (+)
LP/J MGP_LPJ_G0027342
protein coding gene Chr3:89877576-89904489 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027221
protein coding gene Chr3:101549052-101576682 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027884
protein coding gene Chr3:87723453-87752582 (+)
PWK/PhJ MGP_PWKPhJ_G0026301
protein coding gene Chr3:85129876-85157410 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026120
protein coding gene Chr3:86908337-86932532 (+)
WSB/EiJ MGP_WSBEiJ_G0026649
protein coding gene Chr3:88082452-88113665 (+)



Homology
more
  • Human Ortholog
    KHDC4, KH domain containing 4, pre-mRNA splicing factor
  • Vertebrate Orthologs
    9
  • Human Ortholog
    KHDC4, KH domain containing 4, pre-mRNA splicing factor
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BLOM7, KIAA0907, SNORA80EHG
  • Links
    NCBI Gene ID: 22889
    neXtProt AC: NX_Q7Z7F0
    UniProt: Q7Z7F0

  • Chr Location
    1q22; chr1:155913043-155934442 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028060 Ensembl Gene Model | MGI Sequence Detail 27122 C57BL/6J ±  kb
transcript ENSMUST00000029696 Ensembl | MGI Sequence Detail 2981 Not Applicable  
polypeptide ENSMUSP00000029696 Ensembl | MGI Sequence Detail 612 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    Genomic 1
    cDNA 12

    Microarray probesets 4
Other
Accession IDs
less
MGI:1925180, MGI:2139651, MGI:2139724
References
more
  • Summaries
    All 35
    Diseases 1
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:227344 Crisci A, et al., Mammalian splicing factor SF1 interacts with SURP domains of U2 snRNP-associated proteins. Nucleic Acids Res. 2015 Dec 2;43(21):10456-73

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory