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Ccdc9 Gene Detail
Summary
  • Symbol
    Ccdc9
  • Name
    coiled-coil domain containing 9
  • Synonyms
    2600011L02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921443
    NCBI Gene: 243846
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:16274042-16286795 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 8.78 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    133 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921443
protein coding gene Chr7:16272013-16286807 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031706
protein coding gene Chr7:13949873-13962633 (-)
A/J MGP_AJ_G0031678
protein coding gene Chr7:13741598-13754366 (-)
AKR/J MGP_AKRJ_G0031603
protein coding gene Chr7:14048933-14063266 (-)
BALB/cJ MGP_BALBcJ_G0031684
protein coding gene Chr7:13834369-13852873 (-)
C3H/HeJ MGP_C3HHeJ_G0031407
protein coding gene Chr7:14224725-14238194 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032151
protein coding gene Chr7:14696997-14711268 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029230
protein coding gene Chr7:15297027-15309660 (-)
CAST/EiJ MGP_CASTEiJ_G0030757
protein coding gene Chr7:10996175-11016904 (-)
CBA/J MGP_CBAJ_G0031366
protein coding gene Chr7:15172363-15185048 (-)
DBA/2J MGP_DBA2J_G0031522
protein coding gene Chr7:13626494-13639646 (-)
FVB/NJ MGP_FVBNJ_G0031478
protein coding gene Chr7:13519037-13534177 (-)
LP/J MGP_LPJ_G0031607
protein coding gene Chr7:14215503-14228224 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031513
protein coding gene Chr7:15137507-15151557 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032180
protein coding gene Chr7:13829341-13842972 (-)
PWK/PhJ MGP_PWKPhJ_G0030481
protein coding gene Chr7:11138167-11153503 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030309
protein coding gene Chr7:8753227-8765744 (-)
WSB/EiJ MGP_WSBEiJ_G0030854
protein coding gene Chr7:13879335-13895209 (-)



Homology
more
  • Human Ortholog
    CCDC9, coiled-coil domain containing 9
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCDC9, coiled-coil domain containing 9
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 26093
    neXtProt AC: NX_Q9Y3X0
    UniProt: Q9Y3X0

  • Chr Location
    19q13.32; chr19:47256474-47271958 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041375 Ensembl Gene Model | MGI Sequence Detail 12754 C57BL/6J ±  kb
transcript ENSMUST00000118976 Ensembl | MGI Sequence Detail 2175 Not Applicable  
polypeptide ENSMUSP00000114088 Ensembl | MGI Sequence Detail 589 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory