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Ccdc9 Gene Detail
Summary
  • Symbol
    Ccdc9
  • Name
    coiled-coil domain containing 9
  • Synonyms
    2600011L02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921443
    NCBI Gene: 243846
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:16274042-16286795 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 8.78 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    133 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921443
protein coding gene Chr7:16273534-16286815 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031706
protein coding gene Chr7:13949873-13962633 (-)
A/J MGP_AJ_G0031678
protein coding gene Chr7:13741598-13754366 (-)
AKR/J MGP_AKRJ_G0031603
protein coding gene Chr7:14048933-14063266 (-)
BALB/cJ MGP_BALBcJ_G0031684
protein coding gene Chr7:13834369-13852873 (-)
C3H/HeJ MGP_C3HHeJ_G0031407
protein coding gene Chr7:14224725-14238194 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032151
protein coding gene Chr7:14696997-14711268 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029230
protein coding gene Chr7:15297027-15309660 (-)
CAST/EiJ MGP_CASTEiJ_G0030757
protein coding gene Chr7:10996175-11016904 (-)
CBA/J MGP_CBAJ_G0031366
protein coding gene Chr7:15172363-15185048 (-)
DBA/2J MGP_DBA2J_G0031522
protein coding gene Chr7:13626494-13639646 (-)
FVB/NJ MGP_FVBNJ_G0031478
protein coding gene Chr7:13519037-13534177 (-)
LP/J MGP_LPJ_G0031607
protein coding gene Chr7:14215503-14228224 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031513
protein coding gene Chr7:15137507-15151557 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032180
protein coding gene Chr7:13829341-13842972 (-)
PWK/PhJ MGP_PWKPhJ_G0030481
protein coding gene Chr7:11138167-11153503 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030309
protein coding gene Chr7:8753227-8765744 (-)
WSB/EiJ MGP_WSBEiJ_G0030854
protein coding gene Chr7:13879335-13895209 (-)



Homology
more
  • Human Ortholog
    CCDC9, coiled-coil domain containing 9
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCDC9, coiled-coil domain containing 9
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 26093
    neXtProt AC: NX_Q9Y3X0
    UniProt: Q9Y3X0

  • Chr Location
    19q13.32; chr19:47256474-47271958 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041375 Ensembl Gene Model | MGI Sequence Detail 12754 C57BL/6J ±  kb
transcript ENSMUST00000118976 Ensembl | MGI Sequence Detail 2175 Not Applicable  
polypeptide ENSMUSP00000114088 Ensembl | MGI Sequence Detail 589 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    9 Sequences
  • InterPro Domains
    IPR029336 Protein of unknown function DUF4594
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 3
References
more
  • Summaries
    All 20
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory