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Arpc5l Gene Detail
Summary
  • Symbol
    Arpc5l
  • Name
    actin related protein 2/3 complex, subunit 5-like
  • Synonyms
    2010015J01Rik, ARC16-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921442
    NCBI Gene: 74192
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:39007567-39015878 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 24.42 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921442
protein coding gene Chr2:39005348-39015878 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025709
protein coding gene Chr2:37800639-37811099 (+)
A/J MGP_AJ_G0025686
protein coding gene Chr2:36255389-36266345 (+)
AKR/J MGP_AKRJ_G0025656
protein coding gene Chr2:37447187-37458905 (+)
BALB/cJ MGP_BALBcJ_G0025681
protein coding gene Chr2:36314656-36326600 (+)
C3H/HeJ MGP_C3HHeJ_G0025442
protein coding gene Chr2:37358647-37369749 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026127
protein coding gene Chr2:38861396-38871844 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023532
protein coding gene Chr2:34871950-34882143 (+)
CAST/EiJ MGP_CASTEiJ_G0024905
protein coding gene Chr2:37316417-37326912 (+)
CBA/J MGP_CBAJ_G0025421
protein coding gene Chr2:40304101-40316234 (+)
DBA/2J MGP_DBA2J_G0025553
protein coding gene Chr2:35981920-35992994 (+)
FVB/NJ MGP_FVBNJ_G0025515
protein coding gene Chr2:35846860-35857288 (+)
LP/J MGP_LPJ_G0025640
protein coding gene Chr2:37680584-37691035 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025546
protein coding gene Chr2:39889727-39901824 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026185
protein coding gene Chr2:37339661-37351261 (+)
PWK/PhJ MGP_PWKPhJ_G0024647
protein coding gene Chr2:35897082-35907640 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024452
protein coding gene Chr2:37429452-37439967 (+)
WSB/EiJ MGP_WSBEiJ_G0024973
protein coding gene Chr2:37507302-37519344 (+)



Homology
more
  • Human Ortholog
    ARPC5L, actin related protein 2/3 complex subunit 5 like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ARPC5L, actin related protein 2/3 complex subunit 5 like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ARC16-2
  • Links
    NCBI Gene ID: 81873
    neXtProt AC: NX_Q9BPX5
    UniProt: Q9BPX5

  • Chr Location
    9q33.3; chr9:124862118-124877733 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 74192 NCBI Gene Model | MGI Sequence Detail 8312 C57BL/6J ±  kb
transcript NM_028809 RefSeq | MGI Sequence Detail 1271 C57BL/6  
polypeptide Q9D898 UniProt | EBI | MGI Sequence Detail 153 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000004314 actin-related protein 2/3 complex subunit 5-like protein
  • InterPro Domains
    IPR006789 Actin-related protein 2/3 complex subunit 5
    IPR030075 Actin-related protein 2/3 complex subunit 5-like protein
    IPR036743 Actin-related protein 2/3 complex subunit 5 superfamily
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 7
Other
Accession IDs
less
MGI:2139091, MGI:2139397, MGI:2139411
References
more
  • Summaries
    All 30
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:228563 Koscielny G, et al., The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Nucleic Acids Res. 2014 Jan;42(Database issue):D802-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory