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Ccdc3 Gene Detail
Summary
  • Symbol
    Ccdc3
  • Name
    coiled-coil domain containing 3
  • Synonyms
    2310045O21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921436
    NCBI Gene: 74186
  • Gene Overview
    MyGene.info: CCDC3
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:5137776-5230878 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 3.25 cM, cytoband A1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    361 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921436
protein coding gene Chr2:5137601-5235967 (.)
129S1/SvImJ MGP_129S1SvImJ_G0025321
protein coding gene Chr2:2241257-2344780 (+)
A/J MGP_AJ_G0025298
protein coding gene Chr2:2123752-2217478 (+)
AKR/J MGP_AKRJ_G0025266
protein coding gene Chr2:2175879-2270618 (+)
BALB/cJ MGP_BALBcJ_G0025294
protein coding gene Chr2:2105124-2200339 (+)
C3H/HeJ MGP_C3HHeJ_G0025054
protein coding gene Chr2:2162704-2266752 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025736
protein coding gene Chr2:2262600-2371311 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023150
protein coding gene Chr2:1979357-2068061 (+)
CAST/EiJ MGP_CASTEiJ_G0024517
protein coding gene Chr2:2186828-2295644 (+)
CBA/J MGP_CBAJ_G0025033
protein coding gene Chr2:2368476-2479084 (+)
DBA/2J MGP_DBA2J_G0025165
protein coding gene Chr2:2087724-2181202 (+)
FVB/NJ MGP_FVBNJ_G0025127
protein coding gene Chr2:2076678-2168924 (+)
LP/J MGP_LPJ_G0025251
protein coding gene Chr2:2222212-2318414 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025159
protein coding gene Chr2:2257669-2364802 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025794
protein coding gene Chr2:2174877-2275883 (+)
PWK/PhJ MGP_PWKPhJ_G0024268
protein coding gene Chr2:2074311-2171364 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024068
protein coding gene Chr2:2184839-2285870 (+)
WSB/EiJ MGP_WSBEiJ_G0024587
protein coding gene Chr2:2188341-2293438 (+)



Homology
more
  • Human Ortholog
    CCDC3, coiled-coil domain containing 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CCDC3, coiled-coil domain containing 3
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 83643
    neXtProt AC: NX_Q9BQI4
    UniProt: Q9BQI4

  • Chr Location
    10p13; chr10:12896625-13099773 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12870
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CCDC3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    13 phenotypes from 1 allele in 1 genetic background
    2 images
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Aging mice homozygous for a null allele are lean and show decreased epididymal and subcutaneous adipose tissue weight and adipocyte size, mild hyperglycemia, increased insulin sensitivity, reduced liver triglyceride levels and steatosis, and fewer inflammatory cells in epididymal fat tissue.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026676 Ensembl Gene Model | MGI Sequence Detail 93103 C57BL/6J ±  kb
    transcript ENSMUST00000027988 Ensembl | MGI Sequence Detail 2670 Not Applicable  
    polypeptide ENSMUSP00000027988 Ensembl | MGI Sequence Detail 273 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 21
      cDNA 21

      Microarray probesets 3
    References
    more
    • Summaries
      All 27
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 4
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:220560 Kobayashi S, et al., Fat/Vessel-derived Secretory Protein (Favine)/CCDC3 Is Involved in Lipid Accumulation. J Biol Chem. 2015 Mar 20;290(12):7443-51

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory