Acbd5 MGI Mouse Gene Detail - MGI:1921409 - acyl-Coenzyme A binding domain containing 5

Acbd5 Gene Detail

Symbol

Acbd5
Name

acyl-Coenzyme A binding domain containing 5
Synonyms

1300014E15Rik

Feature Type

protein coding gene
IDs

MGI:1921409
NCBI Gene: 74159
Alliance

gene page

Sequence Map

Chr2:23068168-23114510 bp, + strand
From VEGA annotation of GRCm38

Mouse Genome Browser
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Sequence

46343 bp ± kb flank
Genome Browsers

VEGA | Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 15.21 cM, cytoband A3
Mapping Data

2 experiments

Human Ortholog

ACBD5, acyl-CoA binding domain containing 5

Vertebrate Orthologs

12

Human Ortholog

ACBD5, acyl-CoA binding domain containing 5
Orthology source: HGNC, HomoloGene
Links

HGNC:23338

NCBI Gene ID: 91452

neXtProt AC: NX_Q5T8D3

UniProt: Q5T8D3
Chr Location

10p12.1; chr10:27182624-27248674 (-) GRCh38.p7

HomoloGene

Vertebrate Homology Class 12541
1 human;1 mouse;3 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: ACBD5
Protein SuperFamily

membrane-associated diazepam binding inhibitor
Gene Tree

Acbd5

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Phenotype Summary

3 phenotypes from 1 allele in 1 genetic background
8 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

14
Gene trapped

11
Targeted

3
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

21 strains or lines available

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All GO Annotations

9
GO References

3

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

81
Tissues

11
cDNA Data

9
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase acbd5

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Acbd5 interacts with 313 markers (Mir7-1, Mir15a, Mir16-1, ...) View All

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All Sequences

86
RefSeq

21
UniProt

8
CCDS

CCDS50514.1, CCDS50515.1, CCDS50516.1, CCDS57156.1

			Length	Strain/Species	Flank
genomic	OTTMUSG00000011559	VEGA Gene Model \| MGI Sequence Detail	46343	C57BL/6J	± kb
transcript	OTTMUST00000026995	VEGA \| MGI Sequence Detail	3720	Not Applicable
polypeptide	OTTMUSP00000012304	VEGA \| MGI Sequence Detail	508	Not Applicable

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SNPs within 2kb

78 from dbSNP Build 142

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UniProt

8 Sequences
InterPro Domains

IPR016347 Acyl-CoA-binding domain-containing protein 5

IPR000582 Acyl-CoA-binding protein, ACBP

IPR022408 Acyl-CoA-binding protein, ACBP, conserved site

IPR035984 Acyl-CoA binding protein superfamily

IPR014352 FERM/acyl-CoA-binding protein superfamily

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All nucleic 10

cDNA 9

Primer pair 1

Microarray probesets 4

Summaries

All 32

Developmental Gene Expression 2

Gene Ontology 3

Phenotypes 8
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:246912 Ye A, et al., PEG3 control on the mammalian MSL complex. PLoS One. 2017;12(6):e0178363

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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