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Slc35a5
Gene Detail
 Symbol
Name
ID
Slc35a5
solute carrier family 35, member A5
MGI:1921352
Synonyms 1010001J06Rik, D16Ertd450e, D730043G07Rik
Feature Type protein coding gene
Genetic Map
Chromosome 16
29.44 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr16:45139573-45158706 bp, - strand
From VEGA annotation of GRCm38

  19134 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9930  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: nucleotide-sugar transporter
Gene Tree: Slc35a5

Human
homologs
Human Homolog SLC35A5, solute carrier family 35, member A5
NCBI Gene ID 55032
neXtProt AC  NX_Q9BS91
Human Chr (Location)  3q13.2; chr3:112562010-112584439 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(4) Targeted(2)
Incidental mutations (data from APF )
Interactions
Slc35a5 interacts with 303 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process carbohydrate transport, nucleotide-sugar transport, ...
Component Golgi membrane, integral component of membrane, ...
Function nucleotide-sugar transmembrane transporter activity, sugar:proton symporter activity
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (3)    Tissues (3)    Images (1)
Theiler Stages: 15, 23
Assay TypeResults
RNA in situ 1
RT-PCR 2
cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(18) cDNA(15) Primer pair(3)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000024963 (Evidence)
Ensembl Gene ModelENSMUSG00000022664 (Evidence)
Entrez Gene74102 (Evidence)
DFCITC1574866, TC1599112, TC1647469, TC1722192
DoTSDT.527991, DT.97366918, DT.99860827
NIA Mouse Gene IndexU037068
Consensus CDS ProjectCCDS28193.1
International Mouse Knockout Project StatusSlc35a5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024963 VEGA Gene Model | MGI Sequence Detail 19134 C57BL/6J ±  kb
transcript OTTMUST00000061464 VEGA | MGI Sequence Detail 4233 Not Applicable 
polypeptide OTTMUSP00000030148 VEGA | MGI Sequence Detail 437 Not Applicable 

For the selected sequences
All sequences(66) RefSeq(6) UniProt(5)
Polymorphisms SNPs within 2kb(163 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007271 Nucleotide-sugar transporter
InterPro IPR021189 UDP/CMP-sugar transporter
InterPro IPR004689 UDP-galactose transporter
Protein Ontology PR:000029736 UDP-sugar transporter protein SLC35A5
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGI:1196393, MGI:2146560, MGI:2146679, MGI:2445073

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory