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Slc7a13
Gene Detail
Symbol

Name
ID
Slc7a13
solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
MGI:1921337
Synonyms
0610009O04Rik, AGT1, AGT-1, XAT2
Feature Type
protein coding gene
Genetic Map
Chromosome 4
7.63 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:19818725-19842218 bp, + strand
From VEGA annotation of GRCm38

  23494 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23656  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog

HCOP human homology predictions: SLC7A13
Protein SuperFamily: amino acid transporter
Gene Tree: Slc7a13

Human
homologs
SLC7A13, solute carrier family 7 (anionic amino acid transporter), member 13
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 157724
neXtProt AC: NX_Q8TCU3

Human Synonyms: AGT1, AGT-1, XAT2

Human Chr (Location): 8q21.3; chr8:86201763-86230380 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc7a13 interacts with 120 markers (Mir1b, Mir20a, Mir24-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (158)    Tissues (158)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 158
cDNA source data(39)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100495712    NEW 
Molecular
reagents
All nucleic(39) cDNA(39)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000006379 (Evidence)
Ensembl Gene Model ENSMUSG00000041052 (Evidence)
Entrez Gene 74087 (Evidence)
UniGene 173833
DFCI TC1592567, TC1581503
DoTS DT.91335463, DT.97369252, DT.94251065
NIA Mouse Gene Index U004112
Consensus CDS Project CCDS17993.1
International Mouse Phenotyping Consortium Status Slc7a13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006379 VEGA Gene Model | MGI Sequence Detail 23494 C57BL/6J ±  kb
transcript OTTMUST00000014509 VEGA | MGI Sequence Detail 2141 Not Applicable 
polypeptide OTTMUSP00000006741 VEGA | MGI Sequence Detail 478 Not Applicable 

For the selected sequences
All sequences(25) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(90 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002293 Amino acid/polyamine transporter I
Protein Ontology PR:000015197 solute carrier family 7 member 13
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory