3930402G23Rik Gene Detail

Summary

• Symbol
  3930402G23Rik
• Name
  RIKEN cDNA 3930402G23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921277
  NCBI Gene: 665306
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:10974427-10978457 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 5.30 cM, cytoband A2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921277	lncRNA gene	Chr8:10974427-10978457 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotypes from 1 allele in 1 genetic background
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Homozygous null mice show fasting induced lipid accumulation in the liver and elevated fasting liver triglyceride, cholesterol, triglyceride, diacylglyceride, and phosphocholine levels.

Expression

• cDNA Data
  7

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2
• UniProt
  1

• NCBI Gene
  665306

Representative Sequences			Length	Strain/Species
genomic	665306	NCBI Gene Model | MGI Sequence Detail	4031	C57BL/6J
transcript	NR_135302	RefSeq | MGI Sequence Detail	3084	C57BL/6
polypeptide	Q9CYP8	UniProt | EBI | MGI Sequence Detail	157	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:340239 Kim D, et al., Long non-coding RNA G23Rik attenuates fasting-induced lipid accumulation in mouse liver. Mol Cell Endocrinol. 2022 Jul 30;557:111722

TSS for 3930402G23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80351	Chr8:10978449-10978464 (-)	0 bp