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Cpne4 Gene Detail
Summary
  • Symbol
    Cpne4
  • Name
    copine IV
  • Synonyms
    3632411M23Rik, 4933406O10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921270
    NCBI Gene: 74020
  • Gene Overview
    MyGene.info: CPNE4
  • Alliance
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:104566665-105034548 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 56.61 cM, cytoband F1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    6247 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921270
protein coding gene Chr9:104547286-105034548 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035209
protein coding gene Chr9:106225440-106754358 (+)
A/J MGP_AJ_G0035189
protein coding gene Chr9:102404023-102911417 (+)
AKR/J MGP_AKRJ_G0035121
protein coding gene Chr9:104949518-105462386 (+)
BALB/cJ MGP_BALBcJ_G0035182
protein coding gene Chr9:102115860-102613585 (+)
C3H/HeJ MGP_C3HHeJ_G0034892
protein coding gene Chr9:105324864-105861130 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035702
protein coding gene Chr9:109150911-109695400 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032600
protein coding gene Chr9:99971069-100445304 (+)
CAST/EiJ MGP_CASTEiJ_G0034204
protein coding gene Chr9:105222657-105756440 (+)
CBA/J MGP_CBAJ_G0034861
protein coding gene Chr9:112979424-113532278 (+)
DBA/2J MGP_DBA2J_G0035022
protein coding gene Chr9:101886266-102387403 (+)
FVB/NJ MGP_FVBNJ_G0034970
protein coding gene Chr9:100690448-101183516 (+)
LP/J MGP_LPJ_G0035098
protein coding gene Chr9:106433562-106968068 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035009
protein coding gene Chr9:114704493-115247803 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035724
protein coding gene Chr9:105188446-105711993 (+)
PWK/PhJ MGP_PWKPhJ_G0033911
protein coding gene Chr9:102177565-102671832 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033746
protein coding gene Chr9:105270142-105795051 (+)
WSB/EiJ MGP_WSBEiJ_G0034324
protein coding gene Chr9:105074513-105591119 (+)



Homology
more
  • Human Ortholog
    CPNE4, copine 4
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CPNE4, copine 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    COPN4, CPN4
  • Links
    NCBI Gene ID: 131034
    neXtProt AC: NX_Q96A23
    UniProt: Q96A23

  • Chr Location
    3q22.1; chr3:131533560-132285702 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 74020 NCBI Gene Model | MGI Sequence Detail 467884 C57BL/6J ±  kb
transcript NM_028719 RefSeq | MGI Sequence Detail 3975 C57BL/6  
polypeptide Q8BLR2 UniProt | EBI | MGI Sequence Detail 557 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 7
    Primer pair 1
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1918284
References
more
  • Summaries
    All 24
    Developmental Gene Expression 4
    Gene Ontology 3
  • Earliest
    J:86882 Creutz CE, et al., The copines, a novel class of C2 domain-containing, calcium-dependent, phospholipid-binding proteins conserved from Paramecium to humans. J Biol Chem. 1998 Jan 16;273(3):1393-402
  • Latest
    J:256105 Mendelsohn AI, et al., Divergent Hox Coding and Evasion of Retinoid Signaling Specifies Motor Neurons Innervating Digit Muscles. Neuron. 2017 Feb 22;93(4):792-805.e4

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory