About   Help   FAQ
Phf19 Gene Detail
Summary
  • Symbol
    Phf19
  • Name
    PHD finger protein 19
  • Synonyms
    3110009G19Rik, 3321402G02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921266
    NCBI Gene: 74016
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:34893757-34914026 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 23.02 cM, cytoband B
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    78 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921266
protein coding gene Chr2:34893752-34914077 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025645
protein coding gene Chr2:33509699-33530734 (-)
A/J MGP_AJ_G0025622
protein coding gene Chr2:32090060-32110330 (-)
AKR/J MGP_AKRJ_G0025592
protein coding gene Chr2:33223701-33243967 (-)
BALB/cJ MGP_BALBcJ_G0025619
protein coding gene Chr2:32197426-32217723 (-)
C3H/HeJ MGP_C3HHeJ_G0025379
protein coding gene Chr2:33116216-33136497 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026063
protein coding gene Chr2:34478987-34501361 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023472
protein coding gene Chr2:30778826-30799269 (-)
CAST/EiJ MGP_CASTEiJ_G0024841
protein coding gene Chr2:33098921-33119161 (-)
CBA/J MGP_CBAJ_G0025357
protein coding gene Chr2:35812604-35832855 (-)
DBA/2J MGP_DBA2J_G0025490
protein coding gene Chr2:31855816-31878469 (-)
FVB/NJ MGP_FVBNJ_G0025452
protein coding gene Chr2:31751767-31772725 (-)
LP/J MGP_LPJ_G0025576
protein coding gene Chr2:33430078-33452337 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025483
protein coding gene Chr2:35335299-35356372 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026121
protein coding gene Chr2:33105966-33126230 (-)
PWK/PhJ MGP_PWKPhJ_G0024589
protein coding gene Chr2:31768432-31789195 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024389
protein coding gene Chr2:33273709-33293992 (-)
WSB/EiJ MGP_WSBEiJ_G0024910
protein coding gene Chr2:33288079-33308379 (-)



Homology
more
  • Human Ortholog
    PHF19, PHD finger protein 19
  • Vertebrate Orthologs
    8
  • Human Ortholog
    PHF19, PHD finger protein 19
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MTF2L1, PCL3, TDRD19B
  • Links
    NCBI Gene ID: 26147
    neXtProt AC: NX_Q5T6S3
    UniProt: Q5T6S3

  • Chr Location
    9q33.2; chr9:120855651-120901967 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026873 Ensembl Gene Model | MGI Sequence Detail 20270 C57BL/6J ±  kb
    transcript ENSMUST00000028232 Ensembl | MGI Sequence Detail 3741 Not Applicable  
    polypeptide ENSMUSP00000028232 Ensembl | MGI Sequence Detail 578 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR040477 Lysine-specific demethylase 4, Tudor domain
      IPR025894 Polycomb-like MTF2 factor 2, C-terminal domain
      IPR002999 Tudor domain
      IPR011011 Zinc finger, FYVE/PHD-type
      IPR019787 Zinc finger, PHD-finger
      IPR001965 Zinc finger, PHD-type
      IPR019786 Zinc finger, PHD-type, conserved site
      IPR013083 Zinc finger, RING/FYVE/PHD-type
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 18
      Primer pair 1
      Other 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1924231
    References
    more
    • Summaries
      All 37
      Developmental Gene Expression 9
      Gene Ontology 6
      Phenotypes 6
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:266522 Elsen GE, et al., The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6--> Tbr2--> Tbr1. Front Neurosci. 2018;12:571

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    03/19/2019
    MGI 6.13
    The Jackson Laboratory