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4930408O17Rik Gene Detail
Summary
  • Symbol
    4930408O17Rik
  • Name
    RIKEN cDNA 4930408O17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1921178
    NCBI Gene: 73928
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:104857371-104871535 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 54.92 cM, cytoband F1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    135 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921178
lncRNA gene Chr12:104857371-104871535 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020081
protein coding gene Chr12:106689891-106696116 (+)
A/J MGP_AJ_G0020035
protein coding gene Chr12:102635552-102642329 (+)
AKR/J MGP_AKRJ_G0020012
protein coding gene Chr12:105591816-105598084 (+)
BALB/cJ MGP_BALBcJ_G0020021
protein coding gene Chr12:103041721-103047752 (+)
C3H/HeJ MGP_C3HHeJ_G0019824
protein coding gene Chr12:106057237-106076119 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020467
protein coding gene Chr12:109987773-109993943 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018080
protein coding gene Chr12:99347540-99353557 (+)
CAST/EiJ MGP_CASTEiJ_G0019365
protein coding gene Chr12:100898665-100906942 (+)
CBA/J MGP_CBAJ_G0019791
protein coding gene Chr12:114229072-114240802 (+)
DBA/2J MGP_DBA2J_G0019908
protein coding gene Chr12:102182891-102189154 (+)
FVB/NJ MGP_FVBNJ_G0019893
protein coding gene Chr12:100967426-100973650 (+)
LP/J MGP_LPJ_G0019983
protein coding gene Chr12:106558719-106566665 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019931
protein coding gene Chr12:117683884-117690254 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020496
protein coding gene Chr12:105018215-105025215 (+)
PWK/PhJ MGP_PWKPhJ_G0019128
protein coding gene Chr12:96692461-96698902 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018930
protein coding gene Chr12:99288152-99294371 (+)
WSB/EiJ MGP_WSBEiJ_G0019424
protein coding gene Chr12:106001230-106007457 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021101 Ensembl Gene Model | MGI Sequence Detail 14165 C57BL/6J ±  kb
transcript ENSMUST00000222624 Ensembl | MGI Sequence Detail 1131 Not Applicable  
polypeptide Q9CUP9 UniProt | EBI | MGI Sequence Detail 131 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory