4930408O17Rik Gene Detail

Summary

• Symbol
  4930408O17Rik
• Name
  RIKEN cDNA 4930408O17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1921178
  NCBI Gene: 73928
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:104823630-104885889 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 54.92 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2121 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921178	lncRNA gene	Chr12:104823630-104885889 (+)
129S1/SvImJ	ENSMUSG00200028997	lncRNA gene	Chr12:96590356-96604520 (+)
A/J	ENSMUSG00195021744	lncRNA gene	Chr12:99151966-99166136 (+)
AKR/J	ENSMUSG00220040554	lncRNA gene	Chr12:97028160-97042377 (+)
BALB/cJ	ENSMUSG00180037782	lncRNA gene	Chr12:98335596-98349765 (+)
C3H/HeJ	ENSMUSG00175035660	lncRNA gene	Chr12:100964123-100978287 (+)
C57BL/6NJ	ENSMUSG00215042016	lncRNA gene	Chr12:97626259-97640435 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018080	protein coding gene	Chr12:99347540-99353557 (+)
CAST/EiJ	ENSTCUG00005019703	lncRNA gene	Chr12:97086368-97100587 (+)
CBA/J	ENSMUSG00210015073	lncRNA gene	Chr12:98029815-98044018 (+)
DBA/2J	ENSMUSG00185047443	lncRNA gene	Chr12:99796066-99810269 (+)
FVB/NJ	ENSMUSG00205020225	lncRNA gene	Chr12:97020665-97035254 (+)
JF1/MsJ	ENSUMUG00000036025	lncRNA gene	Chr12:104530976-104545180 (+)
LP/J	ENSMUSG00230033003	lncRNA gene	Chr12:106855697-106869863 (+)
NOD/ShiLtJ	ENSMUSG00190030863	lncRNA gene	Chr12:88170702-88184814 (-)
NZO/HlLtJ	ENSMUSG00225038772	lncRNA gene	Chr12:108590793-108604956 (+)
PWK/PhJ	ENSLUMG00010013462	lncRNA gene	Chr12:97972004-97986175 (+)
SPRET/EiJ	ENSMSPG00010019148	lncRNA gene	Chr12:100353562-100367675 (+)
WSB/EiJ	ENSIUOG00005009568	lncRNA gene	Chr12:97036621-97051143 (+)

Homology

• Gene Tree
  4930408O17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930408O17Rik
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• UniProt
  1

• Ensembl
  ENSMUSG00000021101 (Evidence)
• NCBI Gene
  73928

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000021101	Ensembl Gene Model | MGI Sequence Detail	62260	C57BL/6J
transcript	ENSMUST00000222624	Ensembl | MGI Sequence Detail	1131	Not Applicable
polypeptide	Q9CUP9	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930408O17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114888	Chr12:104823338-104823344 (+)	-289 bp
Tssr114890	Chr12:104831635-104831659 (+)	8,017 bp