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Fam161a
Gene Detail
 Symbol
Name
ID
Fam161a
family with sequence similarity 161, member A
MGI:1921123
Synonyms 4930430E16Rik
Feature Type protein coding gene
Genetic Map
Chromosome 11
14.25 cM, cytoband A3.3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:23007531-23030788 bp, + strand
From VEGA annotation of GRCm38

  23258 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:19131  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Fam161a

Human
homologs
Human Homolog FAM161A, family with sequence similarity 161, member A
NCBI Gene ID 84140
neXtProt AC  NX_Q3B820
Human Synonyms  RP28
Human Chr (Location)  2p15; chr2:61824848-61854143 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human FAM161A
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(3) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Fam161a interacts with 241 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process cell projection organization, cilium assembly
Component cell projection, centrosome, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (64)    Tissues (13)    Images (24)
Theiler Stages: 20, 22, 23, 24, 28
Assay TypeResults
RNA in situ 64
cDNA source data(22)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(23) cDNA(23)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000005271 (Evidence)
Ensembl Gene ModelENSMUSG00000049811 (Evidence)
Entrez Gene73873 (Evidence)
UniGene252406
DFCITC1584928, TC1608924, TC1687151
DoTSDT.101347555, DT.103561014, DT.91335104, DT.91348876, DT.94294216, DT.97393795
NIA Mouse Gene IndexU012375
Consensus CDS ProjectCCDS48757.1
International Mouse Knockout Project StatusFam161a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005271 VEGA Gene Model | MGI Sequence Detail 23258 C57BL/6J ±  kb
transcript OTTMUST00000096135 VEGA | MGI Sequence Detail 1935 Not Applicable 
polypeptide OTTMUSP00000053674 VEGA | MGI Sequence Detail 475 Not Applicable 

For the selected sequences
All sequences(80) RefSeq(28) UniProt(7)
Polymorphisms SNPs within 2kb(78 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019579 Uncharacterised protein family UPF0564
Protein Ontology PR:000030937 protein FAM161A
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:188915 Di Gioia SA, et al., FAM161A, associated with retinitis pigmentosa, is a component of the cilia-basal body complex and interacts with proteins involved in ciliopathies. Hum Mol Genet. 2012 Dec 1;21(23):5174-84
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory