Tex49 Gene Detail

Summary

• Symbol
  Tex49
• Name
  testis expressed 49
• Synonyms
  4930415O20Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1921113
  NCBI Gene: 73863
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:98571004-98589580 bp, + strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 54.57 cM, cytoband F2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921113	protein coding gene	Chr15:98571004-98589580 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0022302	protein coding gene	Chr15:100307357-100325554 (+)
A/J	MGP_AJ_G0022260	protein coding gene	Chr15:96350434-96368405 (+)
AKR/J	MGP_AKRJ_G0022235	protein coding gene	Chr15:99320699-99338763 (+)
BALB/cJ	MGP_BALBcJ_G0022267	protein coding gene	Chr15:96547681-96566846 (+)
C3H/HeJ	MGP_C3HHeJ_G0022035	protein coding gene	Chr15:99360118-99379635 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022712	protein coding gene	Chr15:104019330-104043622 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020237	protein coding gene	Chr15:92270408-92288464 (+)
CAST/EiJ	MGP_CASTEiJ_G0021558	protein coding gene	Chr15:100213963-100233741 (+)
CBA/J	MGP_CBAJ_G0022004	protein coding gene	Chr15:107553398-107577517 (+)
DBA/2J	MGP_DBA2J_G0022130	protein coding gene	Chr15:95796768-95815690 (+)
FVB/NJ	MGP_FVBNJ_G0022110	protein coding gene	Chr15:94768787-94787484 (+)
LP/J	MGP_LPJ_G0022202	protein coding gene	Chr15:100462709-100483219 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022130	protein coding gene	Chr15:111574011-111594256 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022727	protein coding gene	Chr15:99393974-99414933 (+)
PWK/PhJ	MGP_PWKPhJ_G0021299	protein coding gene	Chr15:95914018-95933267 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0021134	protein coding gene	Chr15:99235990-99259450 (+)
WSB/EiJ	MGP_WSBEiJ_G0021608	protein coding gene	Chr15:99940157-99961084 (+)

Homology

• HomoloGene
  Vertebrate Homology Class 19174
  1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 macaque, rhesus
  
• Gene Tree
  Tex49
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  38
• Chemically induced (other)
  1
• Gene trapped
  34
• Radiation induced
  2
• Targeted
  1
• Genomic Mutations
  3 involving Tex49
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• Assay Results
  631
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Tex49 interacts with 13 markers (Mir135a-1, Mir135a-2, Mir135b, ...) View All

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS49722.1
• UniGene
  66894

• Ensembl
  ENSMUSG00000022993 (Evidence)
• NCBI Gene
  73863

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000022993	Ensembl Gene Model | MGI Sequence Detail	18577	C57BL/6J
transcript	ENSMUST00000023728	Ensembl | MGI Sequence Detail	558	Not Applicable
polypeptide	ENSMUSP00000023728	Ensembl | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR038775 Testis-expressed protein 49

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 2

References

• Summaries
  All 39

  Diseases 1

  Phenotypes 23
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Tex49:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132947	Chr15:98571007-98571026 (+)	13 bp
Tssr132948	Chr15:98571040-98571045 (+)	39 bp
Tssr132949	Chr15:98571049-98571059 (+)	50 bp