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Ankrd42 Gene Detail
Summary
  • Symbol
    Ankrd42
  • Name
    ankyrin repeat domain 42
  • Synonyms
    4933417L02Rik, Ikbn
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921095
    NCBI Gene: 73845
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:92584175-92637142 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 51.52 cM, cytoband E2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    231 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921095
protein coding gene Chr7:92581723-92637142 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032512
protein coding gene Chr7:95140448-95189720 (-)
A/J MGP_AJ_G0032486
protein coding gene Chr7:92762333-92816028 (-)
AKR/J MGP_AKRJ_G0032422
protein coding gene Chr7:94973740-95029502 (-)
BALB/cJ MGP_BALBcJ_G0032497
protein coding gene Chr7:92436737-92492703 (-)
C3H/HeJ MGP_C3HHeJ_G0032212
protein coding gene Chr7:95343988-95398179 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032995
protein coding gene Chr7:98799298-98869637 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029990
protein coding gene Chr7:95561308-95607819 (-)
CAST/EiJ MGP_CASTEiJ_G0031539
protein coding gene Chr7:86832145-86883743 (-)
CBA/J MGP_CBAJ_G0032178
protein coding gene Chr7:102116214-102201107 (-)
DBA/2J MGP_DBA2J_G0032331
protein coding gene Chr7:91201592-91249696 (-)
FVB/NJ MGP_FVBNJ_G0032287
protein coding gene Chr7:91028957-91081649 (-)
LP/J MGP_LPJ_G0032420
protein coding gene Chr7:96384758-96437861 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032321
protein coding gene Chr7:103273435-103326900 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033017
protein coding gene Chr7:94289529-94340625 (-)
PWK/PhJ MGP_PWKPhJ_G0031257
protein coding gene Chr7:84269617-84319206 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031100
protein coding gene Chr7:81595797-81649985 (-)
WSB/EiJ MGP_WSBEiJ_G0031656
protein coding gene Chr7:94943811-94995595 (-)



Homology
more
  • Human Ortholog
    ANKRD42, ankyrin repeat domain 42
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ANKRD42, ankyrin repeat domain 42
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PPP1R79, SARP
  • Links
    NCBI Gene ID: 338699
    neXtProt AC: NX_Q8N9B4
    UniProt: Q8N9B4

  • Chr Location
    11q14.1; chr11:83193739-83256099 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73845 NCBI Gene Model | MGI Sequence Detail 52968 C57BL/6J ±  kb
transcript NM_028665 RefSeq | MGI Sequence Detail 2801 C57BL/6  
polypeptide Q3V096 UniProt | EBI | MGI Sequence Detail 527 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR002110 Ankyrin repeat
    IPR020683 Ankyrin repeat-containing domain
    IPR036770 Ankyrin repeat-containing domain superfamily
Molecular
Reagents
less
  • All nucleic 10
    Genomic 2
    cDNA 8

    Microarray probesets 3
References
more
  • Summaries
    All 43
    Gene Ontology 1
    Phenotypes 24
  • Earliest
    J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/01/2019
MGI 6.14
The Jackson Laboratory