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Prr27 Gene Detail
Summary
  • Symbol
    Prr27
  • Name
    proline rich 27
  • Synonyms
    4930432K09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1921029
    NCBI Gene: 73779
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:87825697-87846386 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 43.56 cM, cytoband E2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    94 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1921029
protein coding gene Chr5:87825686-87846387 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029693
protein coding gene Chr5:88784639-88806832 (+)
A/J MGP_AJ_G0029660
protein coding gene Chr5:85166809-85187459 (+)
AKR/J MGP_AKRJ_G0029606
protein coding gene Chr5:87988739-88009692 (+)
BALB/cJ MGP_BALBcJ_G0029669
protein coding gene Chr5:86086178-86107054 (+)
C3H/HeJ MGP_C3HHeJ_G0029392
protein coding gene Chr5:88388526-88411321 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030124
protein coding gene Chr5:92443334-92464627 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027362
protein coding gene Chr5:80784351-80802308 (+)
CAST/EiJ MGP_CASTEiJ_G0028802
protein coding gene Chr5:87779571-87799964 (+)
CBA/J MGP_CBAJ_G0029361
protein coding gene Chr5:95351463-95377968 (+)
DBA/2J MGP_DBA2J_G0029506
protein coding gene Chr5:85350031-85360818 (+)
FVB/NJ MGP_FVBNJ_G0029466
protein coding gene Chr5:84250745-84270048 (+)
LP/J MGP_LPJ_G0029594
protein coding gene Chr5:89199995-89220188 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029495
protein coding gene Chr5:100410523-100464428 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030157
protein coding gene Chr5:87546524-87569028 (+)
PWK/PhJ MGP_PWKPhJ_G0028521
protein coding gene Chr5:84321400-84342446 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028359
protein coding gene Chr5:86964738-86985903 (+)
WSB/EiJ MGP_WSBEiJ_G0028881
protein coding gene Chr5:87938786-87963335 (+)



Homology
more
  • Human Ortholog
    PRR27, proline rich 27
  • Vertebrate Orthologs
    2
  • Human Ortholog
    PRR27, proline rich 27
    Orthology source: HGNC
  • Synonyms
    C4orf40
  • Links
    NCBI Gene ID: 401137
    neXtProt AC: NX_Q6MZM9
    UniProt: Q6MZM9

  • Chr Location
    4q13.3; chr4:70154187-70166609 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 73779 NCBI Gene Model | MGI Sequence Detail 20690 C57BL/6J ±  kb
    transcript NM_001163551 RefSeq | MGI Sequence Detail 1325 C57BL/6  
    polypeptide NP_001157023 RefSeq | MGI Sequence Detail 352 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • InterPro Domains
      IPR033533 Proline-rich protein 27
    Molecular
    Reagents
    less
    • All nucleic 8
      Genomic 2
      cDNA 6

      Microarray probesets 2
    References
    more
    • Summaries
      All 29
      Developmental Gene Expression 1
      Phenotypes 11
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    08/13/2019
    MGI 6.14
    The Jackson Laboratory