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Shld1 Gene Detail
Summary
  • Symbol
    Shld1
  • Name
    shieldin complex subunit 1
  • Synonyms
    1110034G24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920997
    NCBI Gene: 73747
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr2:132686931-132751055 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      64125 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 64.74 cM, cytoband F3
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SHLD1, shieldin complex subunit 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SHLD1, shieldin complex subunit 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C20orf196, RINN3
  • Links
    NCBI Gene ID: 149840
    neXtProt AC: NX_Q8IYI0
    UniProt: Q8IYI0

  • Chr Location
    20p12.3; chr20:5750286-5864407 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015666 VEGA Gene Model | MGI Sequence Detail 64125 C57BL/6J ±  kb
transcript OTTMUST00000037222 VEGA | MGI Sequence Detail 1076 Not Applicable  
polypeptide OTTMUSP00000016678 VEGA | MGI Sequence Detail 206 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    428 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR027821 Shieldin complex subunit 1
Molecular
Reagents
less
  • All nucleic 18
    cDNA 18

    Microarray probesets 4
References
more
  • Summaries
    All 35
    Gene Ontology 3
    Phenotypes 11
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/31/2018
MGI 6.12
The Jackson Laboratory