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1110017D15Rik
Gene Detail
Symbol

Name
ID
1110017D15Rik
RIKEN cDNA 1110017D15 gene
MGI:1920971
Synonyms
Cbe1, Smrp1
Feature Type
protein coding gene
Genetic Map
Chromosome 4
21.70 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:41505009-41517333 bp, - strand
From VEGA annotation of GRCm38

  12325 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13074  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: 1110017D15Rik

Human
homologs
Human Homolog C9orf24, chromosome 9 open reading frame 24
NCBI Gene ID 84688
neXtProt AC  NX_Q8NCR6
Human Synonyms  bA573M23.4, CBE1, NYD-SP22, SMRP1
Human Chr (Location)  9p13.3; chr9:34379019-34397899 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
1110017D15Rik interacts with 58 markers (Mir92-1, Mir133b, Mir137, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cell differentiation, cellular protein complex assembly, ...
Component cytoplasm, cytoskeleton, ...
Function alpha-tubulin binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (212)    Tissues (43)    Images (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 176
RT-PCR 36
cDNA source data(26)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(33) cDNA(26) Primer pair(7)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000006656 (Evidence)
Ensembl Gene ModelENSMUSG00000028441 (Evidence)
Entrez Gene73721 (Evidence)
UniGene45614
DFCITC1752611, TC1585942, TC1594906, TC1654498
DoTSDT.94123300, DT.40164181, DT.101407241, DT.101368384
Consensus CDS ProjectCCDS38717.1, CCDS57265.1
International Mouse Knockout Project Status1110017D15Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006656 VEGA Gene Model | MGI Sequence Detail 12325 C57BL/6J ±  kb
transcript OTTMUST00000015211 VEGA | MGI Sequence Detail 1114 Not Applicable 
polypeptide OTTMUSP00000007031 VEGA | MGI Sequence Detail 260 Not Applicable 

For the selected sequences
All sequences(65) RefSeq(18) UniProt(5)
Polymorphisms
SNPs within 2kb(74 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory