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1110017D15Rik Gene Detail
Summary
  • Symbol
    1110017D15Rik
  • Name
    RIKEN cDNA 1110017D15 gene
  • Synonyms
    Cbe1, Smrp1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920971
    NCBI Gene: 73721
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:41505009-41517333 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 21.70 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    69 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920971
protein coding gene Chr4:41505005-41517333 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028163
protein coding gene Chr4:39453395-39465678 (-)
A/J MGP_AJ_G0028121
protein coding gene Chr4:37948765-37961730 (-)
AKR/J MGP_AKRJ_G0028084
protein coding gene Chr4:38934453-38946937 (-)
BALB/cJ MGP_BALBcJ_G0028133
protein coding gene Chr4:38283213-38298223 (-)
C3H/HeJ MGP_C3HHeJ_G0027861
protein coding gene Chr4:39482024-39494438 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028574
protein coding gene Chr4:40914352-40928232 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025915
protein coding gene Chr4:35606403-35618800 (-)
CAST/EiJ MGP_CASTEiJ_G0027317
protein coding gene Chr4:39157372-39169666 (-)
CBA/J MGP_CBAJ_G0027833
protein coding gene Chr4:42307106-42319527 (-)
DBA/2J MGP_DBA2J_G0027977
protein coding gene Chr4:37872389-37885072 (-)
FVB/NJ MGP_FVBNJ_G0027944
protein coding gene Chr4:37202493-37215150 (-)
LP/J MGP_LPJ_G0028085
protein coding gene Chr4:39530279-39544449 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027977
protein coding gene Chr4:45612737-45625595 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028633
protein coding gene Chr4:39048064-39061151 (-)
PWK/PhJ MGP_PWKPhJ_G0027036
protein coding gene Chr4:37902758-37915119 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026863
protein coding gene Chr4:38775870-38792712 (-)
WSB/EiJ MGP_WSBEiJ_G0027393
protein coding gene Chr4:39034550-39047471 (-)



Homology
more
  • Human Ortholog
    C9orf24, chromosome 9 open reading frame 24
  • Vertebrate Orthologs
    8
  • Human Ortholog
    C9orf24, chromosome 9 open reading frame 24
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA573M23.4, CBE1, NYD-SP22, SMRP1
  • Links
    NCBI Gene ID: 84688
    neXtProt AC: NX_Q8NCR6
    UniProt: Q8NCR6

  • Chr Location
    9p13.3; chr9:34379019-34400833 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028441 Ensembl Gene Model | MGI Sequence Detail 12325 C57BL/6J ±  kb
transcript ENSMUST00000030152 Ensembl | MGI Sequence Detail 1114 Not Applicable  
polypeptide ENSMUSP00000030152 Ensembl | MGI Sequence Detail 260 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR028195 Spermatid-specific manchette-related protein 1
Molecular
Reagents
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  • All nucleic 36
    cDNA 27
    Primer pair 9

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:240319 Stauber M, et al., Identification of FOXJ1 effectors during ciliogenesis in the foetal respiratory epithelium and embryonic left-right organiser of the mouse. Dev Biol. 2017 Mar 15;423(2):170-188

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory