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2410089E03Rik
Gene Detail
Symbol

Name
ID
2410089E03Rik
RIKEN cDNA 2410089E03 gene
MGI:1920942
Synonyms
4732468D17Rik, b2b012Clo, Hug, Jbts17
Feature Type
protein coding gene
Genetic Map
Chromosome 15
3.82 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:8169106-8271158 bp, + strand
From VEGA annotation of GRCm38

  102053 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11315  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: C5orf42
Gene Tree: 2410089E03Rik

Human
homologs
C5orf42, chromosome 5 open reading frame 42
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 65250
neXtProt AC: NX_Q9H799

Human Synonyms: JBTS17, OFD6

Human Chr (Location): 5p13.2; chr5:37065171-37249428 (-)  GRCh38.p2

Disease Associations: (3) Diseases Associated with Human C5orf42

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Chemically induced (ENU)(1) Gene trapped(3) Targeted(1) Transposon induced(1)
Genomic Mutations involving 2410089E03Rik (1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Homozygotes exhibit double outlet right ventricle {SDD}, pulmonary atresia/hypolastic pulmonary artery, atrioventricular septal defect, and right aortic arch. Non-cardiovascular defects include cleft palate, polydactyly, transparent chest wall (sternal bone hypoplasia) and hypoplastic lungs.
 
Phenotype Images(64)
Interactions
2410089E03Rik interacts with 169 markers (Mir1a-1, Mir1a-2, Mir10a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component integral component of membrane, membrane
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(10)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(9)
Other database
links
VEGA Gene Model OTTMUSG00000022443 (Evidence)
Ensembl Gene Model ENSMUSG00000039801 (Evidence)
Entrez Gene 73692 (Evidence)
DFCI TC1581936, TC1601600, TC1608418, TC1633142, TC1646382, TC1670479, TC1688920
DoTS DT.101139177, DT.101718772, DT.40146246, DT.60117403, DT.91334194, DT.94171854
NIA Mouse Gene Index U016054, U365170, U378908
Consensus CDS Project CCDS49578.1
International Mouse Phenotyping Consortium Status 2410089E03Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022443 VEGA Gene Model | MGI Sequence Detail 102053 C57BL/6J ±  kb
transcript OTTMUST00000053654 VEGA | MGI Sequence Detail 10469 Not Applicable 
polypeptide OTTMUSP00000025520 VEGA | MGI Sequence Detail 3214 Not Applicable 

For the selected sequences
All sequences(65) RefSeq(19) UniProt(1)
Polymorphisms
SNPs within 2kb(491 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:222159 Li Y, et al., Global genetic analysis in mice unveils central role for cilia in congenital heart disease. Nature. 2015 May 28;521(7553):520-4
All references(30)
Other
accession IDs
MGI:2447821, MGI:5300208

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory