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Cabp4
Gene Detail
Symbol

Name
ID
Cabp4
calcium binding protein 4
MGI:1920910
Synonyms
2410038D05Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 19
3.84 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr19:4135425-4139609 bp, - strand
From Ensembl annotation of GRCm38

  4185 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:16927  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: CABP4
Gene Tree: Cabp4

Human
homologs
CABP4, calcium binding protein 4
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 57010
neXtProt AC: NX_P57796

Human Synonyms: CRSD, CSNB2B

Human Chr (Location): 11q13.2; chr11:67452415-67461774 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human CABP4

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from APF )
 
Mice with disruptions in this gene display structural and electrophysiological abnormalities in the retina.
 
Interactions
Cabp4 interacts with 58 markers (Mir30c-1, Mir30c-2, Mir96, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process photoreceptor cell morphogenesis, phototransduction, ...
Component cytoplasm, cytosol
Function calcium ion binding, metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (56)    Tissues (10)    Images (26)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 56
cDNA source data(15)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase MGC147450    NEW 
Molecular
reagents
All nucleic(16) cDNA(16)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000024842 (Evidence)
Entrez Gene 73660 (Evidence)
UniGene 379226
DFCI TC1597583, TC1587752
DoTS DT.97405226, DT.91334387
NIA Mouse Gene Index U019101
PDB 2M29, 2M28
Consensus CDS Project CCDS29416.1
International Mouse Phenotyping Consortium Status Cabp4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024842 Ensembl Gene Model | MGI Sequence Detail 4185 C57BL/6J ±  kb
transcript ENSMUST00000025761 Ensembl | MGI Sequence Detail 1431 Not Applicable 
polypeptide ENSMUSP00000025761 Ensembl | MGI Sequence Detail 271 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(22) UniProt(2)
Polymorphisms
SNPs within 2kb(33 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR018247 EF-Hand 1, calcium-binding site
InterPro IPR002048 EF-hand domain
InterPro IPR011992 EF-hand-like domain
Protein Ontology PR:000004936 calcium-binding protein 4
References
(Earliest) J:59389 Haeseleer F, et al., Five members of a novel Ca(2+)-binding protein (CABP) subfamily with similarity to calmodulin. J Biol Chem. 2000 Jan 14;275(2):1247-60
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory