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Cabp4
Gene Detail
Symbol

Name
ID
Cabp4
calcium binding protein 4
MGI:1920910
Synonyms
2410038D05Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 19
3.84 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr19:4135425-4139609 bp, - strand
From Ensembl annotation of GRCm38

  4185 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:16927  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Cabp4

Human
homologs
Human Homolog CABP4, calcium binding protein 4
NCBI Gene ID 57010
neXtProt AC  NX_P57796
Human Synonyms  CSNB2B
Human Chr (Location)  11q13.2; chr11:67455347-67461774 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human CABP4
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from APF )
 
Mice with disruptions in this gene display structural and electrophysiological abnormalities in the retina.
 
Interactions
Cabp4 interacts with 58 markers (Mir30c-1, Mir30c-2, Mir96, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process photoreceptor cell morphogenesis, phototransduction, ...
Component cytoplasm, cytosol
Function calcium ion binding, metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (56)    Tissues (10)    Images (26)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 56
cDNA source data(15)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(16) cDNA(16)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000024842 (Evidence)
Entrez Gene73660 (Evidence)
UniGene379226
DFCITC1597583, TC1587752
DoTSDT.91334387, DT.97405226
NIA Mouse Gene IndexU019101
PDB2M28, 2M29
Consensus CDS ProjectCCDS29416.1
International Mouse Knockout Project StatusCabp4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024842 Ensembl Gene Model | MGI Sequence Detail 4185 C57BL/6J ±  kb
transcript ENSMUST00000025761 Ensembl | MGI Sequence Detail 1431 Not Applicable 
polypeptide ENSMUSP00000025761 Ensembl | MGI Sequence Detail 271 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(18) UniProt(3)
Polymorphisms
SNPs within 2kb(33 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR018247 EF-Hand 1, calcium-binding site
InterPro IPR002048 EF-hand domain
InterPro IPR011992 EF-hand-like domain
Protein Ontology PR:000004936 calcium-binding protein 4
References
(Earliest) J:59389 Haeseleer F, et al., Five members of a novel Ca(2+)-binding protein (CABP) subfamily with similarity to calmodulin. J Biol Chem. 2000 Jan 14;275(2):1247-60
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory