1810008I18Rik Gene Detail

Summary

• Symbol
  1810008I18Rik
• Name
  RIKEN cDNA 1810008I18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920875
  NCBI Gene: 100503969
• Alliance
  genome feature page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr7:65452785-65455981 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 35.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920875	lncRNA gene	Chr7:65452681-65465112 (+)
129S1/SvImJ	ENSMUSG00200012419	lncRNA gene	Chr7:52162220-52166919 (+)
A/J	ENSMUSG00195013512	lncRNA gene	Chr7:56590574-56595273 (+)
AKR/J	ENSMUSG00220011477	lncRNA gene	Chr7:50092633-50097333 (+)
BALB/cJ	ENSMUSG00180005159	lncRNA gene	Chr7:53296911-53301624 (+)
C3H/HeJ	ENSMUSG00175010960	lncRNA gene	Chr7:54094460-54099160 (+)
C57BL/6NJ	ENSMUSG00215025231	lncRNA gene	Chr7:53228935-53233640 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006539	lincRNA gene	Chr7:68547686-68551011 (+)
CAST/EiJ	ENSTCUG00005012403	lncRNA gene	Chr7:56770814-56775522 (+)
CBA/J	ENSMUSG00210019923	lncRNA gene	Chr7:53932949-53937648 (+)
DBA/2J	ENSMUSG00185006268	lncRNA gene	Chr7:58256406-58261145 (+)
FVB/NJ	ENSMUSG00205004554	lncRNA gene	Chr7:53928138-53932848 (+)
JF1/MsJ	ENSUMUG00000012547	lncRNA gene	Chr7:63002613-63007352 (+)
LP/J	ENSMUSG00230020843	lncRNA gene	Chr7:64349708-64354412 (+)
NOD/ShiLtJ	ENSMUSG00190007610	lncRNA gene	Chr7:54041205-54045904 (+)
NZO/HlLtJ	ENSMUSG00225016613	lncRNA gene	Chr7:62633972-62638678 (+)
PWK/PhJ	ENSLUMG00010019328	lncRNA gene	Chr7:52541909-52546624 (+)
SPRET/EiJ	ENSMSPG00010003716	lncRNA gene	Chr7:52927910-52932642 (+)
WSB/EiJ	ENSIUOG00005005537	lncRNA gene	Chr7:54470163-54474853 (+)

Homology

• Gene Tree
  1810008I18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1810008I18Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  3

• Ensembl
  ENSMUSG00000100094 (Evidence)
• NCBI Gene
  100503969

Representative Sequences			Length	Strain/Species
genomic	100503969	NCBI Gene Model | MGI Sequence Detail	3197	C57BL/6J
transcript	NR_167723	RefSeq | MGI Sequence Detail	840	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for 1810008I18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67038	Chr7:65452778-65452796 (+)	2 bp
Tssr67039	Chr7:65453648-65453666 (+)	872 bp
Tssr67040	Chr7:65453733-65453740 (+)	952 bp
Tssr67041	Chr7:65453742-65453751 (+)	962 bp
Tssr67042	Chr7:65453764-65453771 (+)	983 bp
Tssr67043	Chr7:65453772-65453786 (+)	994 bp
Tssr67044	Chr7:65453790-65453798 (+)	1,009 bp
Tssr67045	Chr7:65453809-65453810 (+)	1,025 bp
Tssr67046	Chr7:65453814-65453830 (+)	1,037 bp