1700122E12Rik Gene Detail

Summary

• Symbol
  1700122E12Rik
• Name
  RIKEN cDNA 1700122E12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920869
  NCBI Gene: 73619
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:85573817-85575044 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 41.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920869	lncRNA gene	Chr8:85573741-85583294 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015719	unclassified non-coding RNA gene	Chr8:85770790-85772007 (+)
A/J	MGP_AJ_G0015697	unclassified non-coding RNA gene	Chr8:82391016-82392233 (+)
AKR/J	MGP_AKRJ_G0015660	unclassified non-coding RNA gene	Chr8:84830416-84831633 (+)
BALB/cJ	MGP_BALBcJ_G0015658	unclassified non-coding RNA gene	Chr8:82517719-82518936 (+)
C3H/HeJ	MGP_C3HHeJ_G0015480	unclassified non-coding RNA gene	Chr8:85454887-85456104 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016113	unclassified non-coding RNA gene	Chr8:89052032-89053259 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013841	unclassified non-coding RNA gene	Chr8:76182553-76183766 (+)
CAST/EiJ	MGP_CASTEiJ_G0015035	unclassified non-coding RNA gene	Chr8:84877627-84878856 (+)
CBA/J	MGP_CBAJ_G0015461	unclassified non-coding RNA gene	Chr8:92094060-92095277 (+)
DBA/2J	MGP_DBA2J_G0015557	unclassified non-coding RNA gene	Chr8:82030657-82031874 (+)
FVB/NJ	MGP_FVBNJ_G0015563	unclassified non-coding RNA gene	Chr8:80975820-80977037 (+)
LP/J	MGP_LPJ_G0015637	unclassified non-coding RNA gene	Chr8:85879863-85881080 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015585	unclassified non-coding RNA gene	Chr8:94649765-94650982 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016155	unclassified non-coding RNA gene	Chr8:84820917-84822144 (+)
PWK/PhJ	MGP_PWKPhJ_G0014816	unclassified non-coding RNA gene	Chr8:81277213-81278439 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014605	unclassified non-coding RNA gene	Chr8:83629886-83631119 (+)
WSB/EiJ	MGP_WSBEiJ_G0015139	unclassified non-coding RNA gene	Chr8:85247643-85248860 (+)

Homology

• Gene Tree
  1700122E12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  33 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  8
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700122E12Rik
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000087685 (Evidence)
• NCBI Gene
  73619

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087685	Ensembl Gene Model | MGI Sequence Detail	1228	C57BL/6J
transcript	ENSMUST00000147538	Ensembl | MGI Sequence Detail	479	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 41

  Phenotypes 33
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:282477 Baldelomar EJ, et al., In vivo measurements of kidney glomerular number and size in healthy and Os(/+) mice using MRI. Am J Physiol Renal Physiol. 2019 Oct 1;317(4):F865-F873

TSS for 1700122E12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2629	Chr8:85572871-85572894 (+)	-934 bp
Tssr78450	Chr8:85573852-85573863 (+)	41 bp
Tssr78451	Chr8:85573866-85573879 (+)	56 bp