1700126A01Rik MGI Mouse Gene Detail - MGI:1920852

Sequence Map

Chr1:57166499-57168559 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920852	lncRNA gene	Chr1:57166474-57168559 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004836	lincRNA gene	Chr1:56926145-56928205 (+)
A/J	MGP_AJ_G0004817	lincRNA gene	Chr1:54948254-54950314 (+)
AKR/J	MGP_AKRJ_G0004796	lincRNA gene	Chr1:56408440-56410500 (+)
BALB/cJ	MGP_BALBcJ_G0004799	lincRNA gene	Chr1:54982853-54984913 (+)
C3H/HeJ	MGP_C3HHeJ_G0004747	lincRNA gene	Chr1:56703921-56705981 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004949	lincRNA gene	Chr1:59288375-59290435 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004378	lincRNA gene	Chr1:50923784-50926198 (+)
CAST/EiJ	MGP_CASTEiJ_G0004701	lincRNA gene	Chr1:55969764-55971824 (+)
CBA/J	MGP_CBAJ_G0004740	lincRNA gene	Chr1:60983287-60985347 (+)
DBA/2J	MGP_DBA2J_G0004758	lincRNA gene	Chr1:54362971-54365031 (+)
FVB/NJ	MGP_FVBNJ_G0004778	lincRNA gene	Chr1:53688972-53691032 (+)
LP/J	MGP_LPJ_G0004837	lincRNA gene	Chr1:57823978-57826038 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004762	lincRNA gene	Chr1:64027033-64029095 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004953	lincRNA gene	Chr1:56408289-56410349 (+)
PWK/PhJ	MGP_PWKPhJ_G0004654	lincRNA gene	Chr1:53696438-53698498 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004580	lincRNA gene	Chr1:55989601-55991663 (+)
WSB/EiJ	MGP_WSBEiJ_G0004745	lincRNA gene	Chr1:56078125-56080186 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000099945	Ensembl Gene Model \| MGI Sequence Detail	2061	C57BL/6J	± kb
	transcript	ENSMUST00000185283	Ensembl \| MGI Sequence Detail	2061	Not Applicable

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Summaries

All 13

Phenotypes 4
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700126A01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6741	Chr1:57166464-57166499 (+)	-17 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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