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C2cd6 Gene Detail
Summary
  • Symbol
    C2cd6
  • Name
    C2 calcium dependent domain containing 6
  • Synonyms
    1700052H20Rik, 4930408G06Rik, Als2cr11, Als2cr11b, C2cd6b, Gm33589
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920713
    NCBI Gene: 73463
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:58997116-59094900 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 29.20 cM, cytoband C2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    355 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920713
protein coding gene Chr1:58997116-59095023 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016061
protein coding gene Chr1:58996563-59044742 (-)
A/J MGP_AJ_G0016044
protein coding gene Chr1:56945901-56989603 (-)
AKR/J MGP_AKRJ_G0016000
protein coding gene Chr1:58538426-58584400 (-)
BALB/cJ MGP_BALBcJ_G0015999
protein coding gene Chr1:56983938-57031962 (-)
C3H/HeJ MGP_C3HHeJ_G0015831
protein coding gene Chr1:58787430-58833712 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016452
protein coding gene Chr1:61321479-61368187 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014173
protein coding gene Chr1:52770822-52815690 (-)
CAST/EiJ MGP_CASTEiJ_G0015413
protein coding gene Chr1:57922857-57972329 (-)
CBA/J MGP_CBAJ_G0015803
protein coding gene Chr1:63241432-63290251 (-)
DBA/2J MGP_DBA2J_G0015904
protein coding gene Chr1:56368678-56414937 (-)
FVB/NJ MGP_FVBNJ_G0015906
protein coding gene Chr1:55673295-55718049 (-)
LP/J MGP_LPJ_G0015976
protein coding gene Chr1:59881685-59925953 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015926
protein coding gene Chr1:66178882-66229091 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016499
protein coding gene Chr1:58448460-58494289 (-)
PWK/PhJ MGP_PWKPhJ_G0015200
protein coding gene Chr1:55708758-55754027 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014980
protein coding gene Chr1:57972481-58021659 (-)
WSB/EiJ MGP_WSBEiJ_G0015476
protein coding gene Chr1:58151479-58198441 (-)



Homology
more
  • Human Ortholog
    C2CD6, C2 calcium dependent domain containing 6
  • Vertebrate Orthologs
    2
  • Human Ortholog
    C2CD6, C2 calcium dependent domain containing 6
    Orthology source: HGNC, HGNC
  • Synonyms
    ALS2CR11
  • Links
    NCBI Gene ID: 151254
    neXtProt AC: NX_Q53TS8
    UniProt: Q53TS8

  • Chr Location
    2q33.1; chr2:201487421-201619182 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    5
  • Genomic Mutations
    2 involving C2cd6
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000072295 Ensembl Gene Model | MGI Sequence Detail 97785 C57BL/6J ±  kb
transcript ENSMUST00000238949 Ensembl | MGI Sequence Detail 7029 Not Applicable  
polypeptide ENSMUSP00000159118 Ensembl | MGI Sequence Detail 2282 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    7 Sequences
  • InterPro Domains
    IPR031462 C2 calcium-dependent domain-containing protein 6
Molecular
Reagents
less
  • All nucleic 13
    Genomic 3
    cDNA 10

    Microarray probesets 5
Other
Accession IDs
less
MGI:1915429, MGI:5592748
References
more
  • Summaries
    All 26
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/10/2020
MGI 6.16
The Jackson Laboratory