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1700048O20Rik Gene Detail
Summary
  • Symbol
    1700048O20Rik
  • Name
    RIKEN cDNA 1700048O20 gene
  • Synonyms
    1700022O21Rik
  • Feature Type
    lincRNA gene
  • IDs
    MGI:1920637
    NCBI Gene: 69430
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121937275-121947016 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 72.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920637
lincRNA gene Chr9:121937223-121947016 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035455
protein coding gene Chr9:124904337-124913220 (+)
A/J MGP_AJ_G0035436
protein coding gene Chr9:120148035-120156918 (+)
AKR/J MGP_AKRJ_G0035369
protein coding gene Chr9:123355556-123364436 (+)
BALB/cJ MGP_BALBcJ_G0035432
protein coding gene Chr9:120058414-120067269 (+)
C3H/HeJ MGP_C3HHeJ_G0035139
protein coding gene Chr9:123807771-123816455 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035955
protein coding gene Chr9:128327746-128338645 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032837
protein coding gene Chr9:117302351-117311978 (+)
CAST/EiJ MGP_CASTEiJ_G0034444
protein coding gene Chr9:123856924-123866685 (+)
CBA/J MGP_CBAJ_G0035107
protein coding gene Chr9:133034072-133046024 (+)
DBA/2J MGP_DBA2J_G0035266
protein coding gene Chr9:119589331-119598414 (+)
FVB/NJ MGP_FVBNJ_G0035213
protein coding gene Chr9:118505649-118516238 (+)
LP/J MGP_LPJ_G0035345
protein coding gene Chr9:125240631-125254100 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035254
protein coding gene Chr9:133939527-133948391 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035974
protein coding gene Chr9:123791101-123800120 (+)
PWK/PhJ MGP_PWKPhJ_G0034148
protein coding gene Chr9:120045786-120054780 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033985
protein coding gene Chr9:123914099-123922776 (+)
WSB/EiJ MGP_WSBEiJ_G0034564
protein coding gene Chr9:123648731-123657417 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 69430 NCBI Gene Model | MGI Sequence Detail 9742 C57BL/6J ±  kb
transcript NR_033553 RefSeq | MGI Sequence Detail 1908 C57BL/6  
polypeptide Q3V488 UniProt | EBI | MGI Sequence Detail 91 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036051 KRAB domain superfamily
    IPR001909 Krueppel-associated box
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
Other
Accession IDs
less
MGI:1916680
References
more
  • Summaries
    All 13
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory