1700049L16Rik MGI Mouse Pseudogene Detail - MGI:1920633

Symbol

1700049L16Rik
Name

RIKEN cDNA 1700049L16 gene

Feature Type

pseudogene

BioType Conflict
IDs

MGI:1920633
NCBI Gene: 108950
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr10:71815712-71816524 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 10, 37.15 cM
Mapping Data

1 experiment

SNPs within 2kb

120 from dbSNP Build 142
Strain Annotations

36

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920633	pseudogene	Chr10:71815712-71816535 (-)
129S1/SvImJ	ENSMUSG00200017615	pseudogene	Chr10:68515544-68516086 (-)
129S1/SvImJ	ENSMUSG00200017126	protein coding gene	Chr10:68508125-68516193 (-)
A/J	ENSMUSG00195005698	protein coding gene	Chr10:68821037-68829430 (-)
A/J	ENSMUSG00195005930	pseudogene	Chr10:68828781-68829323 (-)
AKR/J	ENSMUSG00220026282	protein coding gene	Chr10:68465177-68473575 (-)
AKR/J	ENSMUSG00220028454	pseudogene	Chr10:68472926-68473468 (-)
BALB/cJ	ENSMUSG00180007714	protein coding gene	Chr10:68835380-68843774 (-)
BALB/cJ	ENSMUSG00180007871	pseudogene	Chr10:68843125-68843667 (-)
C3H/HeJ	ENSMUSG00175012691	protein coding gene	Chr10:68686783-68695180 (-)
C3H/HeJ	ENSMUSG00175013609	pseudogene	Chr10:68694531-68695073 (-)
C57BL/6NJ	ENSMUSG00215003460	protein coding gene	Chr10:68444625-68453022 (-)
C57BL/6NJ	ENSMUSG00215004017	pseudogene	Chr10:68452373-68452915 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009432	pseudogene	Chr10:65995737-65996543 (-)
CAST/EiJ	ENSTCUG00005027788	pseudogene	Chr10:68355283-68355825 (-)
CAST/EiJ	ENSTCUG00005025630	protein coding gene	Chr10:68344343-68355932 (-)
CBA/J	ENSMUSG00210009364	protein coding gene	Chr10:68550662-68559055 (-)
CBA/J	ENSMUSG00210009910	pseudogene	Chr10:68558406-68558948 (-)
DBA/2J	ENSMUSG00185021195	pseudogene	Chr10:68913381-68913923 (-)
DBA/2J	ENSMUSG00185019412	protein coding gene	Chr10:68905637-68914030 (-)
FVB/NJ	ENSMUSG00205007505	pseudogene	Chr10:68647664-68648206 (-)
FVB/NJ	ENSMUSG00205006970	protein coding gene	Chr10:68639920-68648313 (-)
JF1/MsJ	ENSUMUG00000007939	protein coding gene	Chr10:70047349-70055621 (-)
JF1/MsJ	ENSUMUG00000025562	pseudogene	Chr10:70054972-70055514 (-)
LP/J	ENSMUSG00230051357	pseudogene	Chr10:70683340-70683882 (-)
LP/J	ENSMUSG00230046224	protein coding gene	Chr10:70675600-70683989 (-)
NOD/ShiLtJ	ENSMUSG00190007922	protein coding gene	Chr10:68876251-68884654 (-)
NOD/ShiLtJ	ENSMUSG00190007955	pseudogene	Chr10:68884005-68884547 (-)
NZO/HlLtJ	ENSMUSG00225048525	pseudogene	Chr10:74979584-74980126 (-)
NZO/HlLtJ	ENSMUSG00225047273	protein coding gene	Chr10:74971840-74980233 (-)
PWK/PhJ	ENSLUMG00010007126	protein coding gene	Chr10:68473898-68482177 (-)
PWK/PhJ	ENSLUMG00010007748	pseudogene	Chr10:68481528-68482070 (-)
SPRET/EiJ	ENSMSPG00010022167	protein coding gene	Chr10:70189841-70191490 (-)
SPRET/EiJ	ENSMSPG00010024105	pseudogene	Chr10:70190841-70191383 (-)
WSB/EiJ	ENSIUOG00005033595	pseudogene	Chr10:68434913-68435455 (-)
WSB/EiJ	ENSIUOG00005033296	protein coding gene	Chr10:68427169-68435562 (-)

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Gene Tree

1700049L16Rik

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Radiation induced

1
Genomic Mutations

2 involving 1700049L16Rik
Find Mice (IMSR)

0 strains or lines available

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All GO Annotations

2
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

3

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

45
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000043859 (Evidence)
NCBI Gene

108950

			Length	Strain/Species	Flank
genomic	ENSMUSG00000043859	Ensembl Gene Model \| MGI Sequence Detail	813	C57BL/6J	± kb
transcript	ENSMUST00000049520	Ensembl \| MGI Sequence Detail	813	Not Applicable
polypeptide	ENSMUSP00000160185	Ensembl \| MGI Sequence Detail	180	Not Applicable

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UniProt

2 Sequences
InterPro Domains

IPR033335 Microtubule-associated protein Jupiter

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All nucleic 3

cDNA 3

Microarray probesets 2

Summaries

All 17

Gene Ontology 1

Phenotypes 6
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700049L16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98086	Chr10:71816512-71816548 (-)	-6 bp
Tssr98085	Chr10:71816500-71816511 (-)	18 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24