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1700039I01Rik Gene Detail
Summary
  • Symbol
    1700039I01Rik
  • Name
    RIKEN cDNA 1700039I01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920596
    NCBI Gene: 73346
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr1:63287180-63287658 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    23 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920596
 lncRNA gene Chr1:63287173-63292355 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000462
 unclassified gene Chr1:63396066-63396544 (-)
A/J MGP_AJ_G0000436
 unclassified gene Chr1:61149572-61150050 (-)
AKR/J MGP_AKRJ_G0000424
 unclassified gene Chr1:62837376-62837854 (-)
BALB/cJ MGP_BALBcJ_G0000428
 unclassified gene Chr1:61236879-61237357 (-)
C3H/HeJ MGP_C3HHeJ_G0000414
 unclassified gene Chr1:63110764-63111242 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000543
 unclassified gene Chr1:65836360-65836838 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0000300
 unclassified gene Chr1:57264307-57264782 (-)
CAST/EiJ MGP_CASTEiJ_G0000408
 unclassified gene Chr1:62380907-62381385 (-)
CBA/J MGP_CBAJ_G0000405
 unclassified gene Chr1:67935776-67936254 (-)
DBA/2J MGP_DBA2J_G0000410
 unclassified gene Chr1:60564365-60564843 (-)
FVB/NJ MGP_FVBNJ_G0000423
 unclassified gene Chr1:59858852-59859330 (-)
LP/J MGP_LPJ_G0000467
 unclassified gene Chr1:64281844-64282322 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000422
 unclassified gene Chr1:70855652-70856130 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000539
 unclassified gene Chr1:62819537-62820015 (-)
PWK/PhJ MGP_PWKPhJ_G0000364
 unclassified gene Chr1:59933985-59934463 (-)
SPRET/EiJ MGP_SPRETEiJ_G0000341
 unclassified gene Chr1:62336505-62336983 (-)
WSB/EiJ MGP_WSBEiJ_G0000413
 unclassified gene Chr1:62545537-62546015 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving 1700039I01Rik
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000102536 Ensembl Gene Model | MGI Sequence Detail 479 C57BL/6J ±  kb
transcript AK006642 GenBank | ENA | DDBJ | MGI Sequence Detail 480 C57BL/6J  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 13
    Phenotypes 4
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory