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Arhgef6 Gene Detail
Summary
  • Symbol
    Arhgef6
  • Name
    Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
  • Synonyms
    1600028C08Rik, 1700038J06Rik, 4930592P22Rik, alpha-PIX
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920591
    NCBI Gene: 73341
  • Gene Overview
    MyGene.info: ARHGEF6
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:57231485-57338729 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 31.26 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    338 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920591
protein coding gene ChrX:57231485-57338758 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035747
protein coding gene ChrX:52557780-52670560 (-)
A/J MGP_AJ_G0035730
protein coding gene ChrX:52754920-52864512 (-)
AKR/J MGP_AKRJ_G0035650
protein coding gene ChrX:54152314-54264907 (-)
BALB/cJ MGP_BALBcJ_G0035717
protein coding gene ChrX:52200958-52309015 (-)
C3H/HeJ MGP_C3HHeJ_G0035419
protein coding gene ChrX:53086942-53199525 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036246
protein coding gene ChrX:53947549-54058527 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033097
protein coding gene ChrX:52157390-52264287 (-)
CAST/EiJ MGP_CASTEiJ_G0034712
protein coding gene ChrX:38978528-39094026 (-)
CBA/J MGP_CBAJ_G0035394
protein coding gene ChrX:55529462-55647560 (-)
DBA/2J MGP_DBA2J_G0035548
protein coding gene ChrX:52330637-52437876 (-)
FVB/NJ MGP_FVBNJ_G0035498
protein coding gene ChrX:51924854-52036666 (-)
LP/J MGP_LPJ_G0035636
protein coding gene ChrX:53141631-53251249 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035534
protein coding gene ChrX:57077190-57188520 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036262
protein coding gene ChrX:52585839-52694179 (-)
PWK/PhJ MGP_PWKPhJ_G0034408
protein coding gene ChrX:37247532-37355357 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034252
protein coding gene ChrX:39731845-39844699 (-)
WSB/EiJ MGP_WSBEiJ_G0034855
protein coding gene ChrX:52127263-52238098 (-)



Homology
more
  • Human Ortholog
    ARHGEF6, Rac/Cdc42 guanine nucleotide exchange factor 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ARHGEF6, Rac/Cdc42 guanine nucleotide exchange factor 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    alphaPIX, alpha-PIX, Cool-2, COOL2, MRX46, PIXA
  • Links
    NCBI Gene ID: 9459
    neXtProt AC: NX_Q15052
    UniProt: Q15052

  • Chr Location
    Xq26.3; chrX:136665547-136781656 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human ARHGEF6 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    22 phenotypes from 3 alleles in 3 genetic backgrounds
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a truncated allele exhibit decreased mature lymphocyte cell numbers, decreased B and T cell proliferation, and defective humeral response. Mice homozygous for a reporter allele exhibit abnormal dendrite morphology and synaptic plasticity and cognitive defects.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000031133 Ensembl Gene Model | MGI Sequence Detail 107245 C57BL/6J ±  kb
    transcript ENSMUST00000033468 Ensembl | MGI Sequence Detail 4569 Not Applicable  
    polypeptide ENSMUSP00000033468 Ensembl | MGI Sequence Detail 795 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • PDB
    • InterPro Domains
      IPR001715 Calponin homology domain
      IPR036872 CH domain superfamily
      IPR000219 Dbl homology (DH) domain
      IPR035899 Dbl homology (DH) domain superfamily
      IPR001331 Guanine-nucleotide dissociation stimulator, CDC24, conserved site
      IPR011993 PH-like domain superfamily
      IPR001849 Pleckstrin homology domain
      IPR035788 Rho guanine nucleotide exchange factor 6, SH3 domain
      IPR032409 Rho guanine nucleotide exchange factor, coiled-coil domain
      IPR001452 SH3 domain
      IPR036028 SH3-like domain superfamily
      IPR003096 Smooth muscle protein/calponin
    Molecular
    Reagents
    less
    • All nucleic 55
      Genomic 1
      cDNA 54

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1923183, MGI:1923947
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 3
      Gene Ontology 4
      Phenotypes 10
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:260061 Tedford K, et al., The opposing forces of shear flow and sphingosine-1-phosphate control marginal zone B cell shuttling. Nat Commun. 2017 Dec 22;8(1):2261

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory