1700031M16Rik Gene Detail

Summary

• Symbol
  1700031M16Rik
• Name
  RIKEN cDNA 1700031M16 gene
• Synonyms
  4930413L20Rik

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1920552
  NCBI Gene: 73302
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:98296946-98311456 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 54.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  533 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920552	lncRNA gene	Chr15:98296326-98314016 (+)
129S1/SvImJ	ENSMUSG00200052112	pseudogene	Chr15:95483929-95501775 (+)
A/J	ENSMUSG00195047875	pseudogene	Chr15:95360554-95378071 (+)
AKR/J	ENSMUSG00220049569	pseudogene	Chr15:95366478-95381773 (+)
BALB/cJ	ENSMUSG00180048062	pseudogene	Chr15:95271448-95289295 (+)
C3H/HeJ	ENSMUSG00175046586	pseudogene	Chr15:95540738-95558249 (+)
C57BL/6NJ	ENSMUSG00215051949	pseudogene	Chr15:95334333-95352178 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020230	protein coding gene	Chr15:92085963-92103465 (+)
CAST/EiJ	ENSTCUG00005047559	pseudogene	Chr15:94809065-94826807 (+)
CBA/J	ENSMUSG00210031620	pseudogene	Chr15:95326064-95341361 (+)
DBA/2J	ENSMUSG00185043981	pseudogene	Chr15:95366367-95381661 (+)
FVB/NJ	ENSMUSG00205046398	pseudogene	Chr15:95069505-95087352 (+)
JF1/MsJ	ENSUMUG00000057109	pseudogene	Chr15:94829769-94847205 (+)
LP/J	ENSMUSG00230040442	pseudogene	Chr15:98696699-98711994 (+)
NOD/ShiLtJ	ENSMUSG00190051379	pseudogene	Chr15:95349459-95367310 (+)
NZO/HlLtJ	ENSMUSG00225043565	pseudogene	Chr15:98971373-98989222 (+)
PWK/PhJ	ENSLUMG00010050517	pseudogene	Chr15:95042401-95057688 (+)
SPRET/EiJ	ENSMSPG00010050635	pseudogene	Chr15:96857121-96874832 (+)
WSB/EiJ	ENSIUOG00005038879	pseudogene	Chr15:95463223-95480706 (+)

Homology

• Human Ortholog
  C12orf54, chromosome 12 open reading frame 54

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C12orf54, chromosome 12 open reading frame 54
  
• Synonyms
  HSD-29, HSD-30
• Links
  HGNC:28553

  NCBI Gene ID: 121273

  UniProt: Q6X4T0

  
  
• Chr Location
  12q13.11; chr12:48413154-48496524 (+)  GRCh38

---

• MGI Vertebrate Homology
  1700031M16Rik stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: C12orf54
• Gene Tree
  1700031M16Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  22 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving 1700031M16Rik
• Find Mice (IMSR)
  2 strains or lines available

Male mice homozygous for a knock-out allele are fertile and exhibit normal testis gross appearance, normal testis and epididymis histology and germ cell number, and normal sperm morphology and motility.

Expression

• Assay Results
  597
• cDNA Data
  33

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000099353 (Evidence)
• NCBI Gene
  73302

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099353	Ensembl Gene Model | MGI Sequence Detail	14511	C57BL/6J
transcript	ENSMUST00000231222	Ensembl | MGI Sequence Detail	343	Not Applicable

Molecular
Reagents

• All nucleic 33

  cDNA 33

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1921028

References

• Summaries
  All 32

  Diseases 1

  Phenotypes 22
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)