1700041G16Rik Gene Detail

Summary

• Symbol
  1700041G16Rik
• Name
  RIKEN cDNA 1700041G16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920549
  NCBI Gene: 73299
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:23295627-23298754 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 11.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920549	lncRNA gene	Chr8:23295539-23299555 (+)
129S1/SvImJ	ENSMUSG00200033335	lncRNA gene	Chr8:18337983-18341773 (+)
A/J	ENSMUSG00195044099	lncRNA gene	Chr8:18889494-18893284 (+)
AKR/J	ENSMUSG00220035361	lncRNA gene	Chr8:18523165-18526945 (+)
BALB/cJ	ENSMUSG00180026026	lncRNA gene	Chr8:18414138-18417930 (+)
C3H/HeJ	ENSMUSG00175040768	lncRNA gene	Chr8:18487201-18490981 (+)
C57BL/6NJ	ENSMUSG00215028884	lncRNA gene	Chr8:18377195-18380966 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004113	antisense lncRNA gene	Chr8:17334719-17338361 (+)
CAST/EiJ	ENSTCUG00005019490	lncRNA gene	Chr8:18714036-18717837 (+)
CBA/J	ENSMUSG00210043843	lncRNA gene	Chr8:18413704-18417494 (+)
DBA/2J	ENSMUSG00185039381	lncRNA gene	Chr8:24224471-24228252 (+)
FVB/NJ	ENSMUSG00205036776	lncRNA gene	Chr8:17911730-17915522 (+)
JF1/MsJ	ENSUMUG00000029417	lncRNA gene	Chr8:26093882-26097696 (+)
LP/J	ENSMUSG00230011630	lncRNA gene	Chr8:27973120-27976896 (+)
NOD/ShiLtJ	ENSMUSG00190038731	lncRNA gene	Chr8:18447218-18451008 (+)
NZO/HlLtJ	ENSMUSG00225021547	lncRNA gene	Chr8:31592151-31595922 (+)
PWK/PhJ	ENSLUMG00010032323	lncRNA gene	Chr8:18456806-18460615 (+)
SPRET/EiJ	ENSMSPG00010014584	lncRNA gene	Chr8:18707338-18711064 (+)
WSB/EiJ	ENSIUOG00005021960	lncRNA gene	Chr8:19147032-19150813 (+)

Homology

• Gene Tree
  1700041G16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000054822 (Evidence)
• NCBI Gene
  73299

Representative Sequences			Length	Strain/Species
genomic	73299	NCBI Gene Model | MGI Sequence Detail	3128	C57BL/6J
transcript	AK033542	GenBank | ENA | DDBJ | MGI Sequence Detail	1826	C57BL/6J
polypeptide	Q8CF28	UniProt | EBI | MGI Sequence Detail	62	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14