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Gpbp1 Gene Detail
Summary
  • Symbol
    Gpbp1
  • Name
    GC-rich promoter binding protein 1
  • Synonyms
    1700034P14Rik, D230035M11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920524
    NCBI Gene: 73274
  • Gene Overview
    MyGene.info: GPBP1
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:111425680-111490111 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 63.23 cM, cytoband D2.1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    325 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920524
protein coding gene Chr13:111425680-111490125 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020932
protein coding gene Chr13:113924465-113999345 (-)
A/J MGP_AJ_G0020882
protein coding gene Chr13:109388746-109455267 (-)
AKR/J MGP_AKRJ_G0020857
protein coding gene Chr13:112686713-112754899 (-)
BALB/cJ MGP_BALBcJ_G0020882
protein coding gene Chr13:110089139-110156968 (-)
C3H/HeJ MGP_C3HHeJ_G0020671
protein coding gene Chr13:112470445-112539344 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021317
protein coding gene Chr13:117296483-117376830 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018886
protein coding gene Chr13:104716481-104783798 (-)
CAST/EiJ MGP_CASTEiJ_G0020190
protein coding gene Chr13:112083703-112156843 (-)
CBA/J MGP_CBAJ_G0020633
protein coding gene Chr13:121822911-121897214 (-)
DBA/2J MGP_DBA2J_G0020756
protein coding gene Chr13:109108937-109174593 (-)
FVB/NJ MGP_FVBNJ_G0020739
protein coding gene Chr13:107792324-107866074 (-)
LP/J MGP_LPJ_G0020831
protein coding gene Chr13:113963252-114036674 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020767
protein coding gene Chr13:122184752-122261386 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021355
protein coding gene Chr13:112140592-112207691 (-)
PWK/PhJ MGP_PWKPhJ_G0019943
protein coding gene Chr13:107839086-107904933 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019765
protein coding gene Chr13:108449736-108516320 (-)
WSB/EiJ MGP_WSBEiJ_G0020248
protein coding gene Chr13:112725580-112793026 (-)



Homology
more
  • Human Ortholog
    GPBP1, GC-rich promoter binding protein 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    GPBP1, GC-rich promoter binding protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GPBP, SSH6, VASCULIN
  • Links
    NCBI Gene ID: 65056
    neXtProt AC: NX_Q86WP2
    UniProt: Q86WP2

  • Chr Location
    5q11.2; chr5:57173826-57264679 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032745 Ensembl Gene Model | MGI Sequence Detail 64432 C57BL/6J ±  kb
transcript ENSMUST00000047627 Ensembl | MGI Sequence Detail 3694 Not Applicable  
polypeptide ENSMUSP00000048240 Ensembl | MGI Sequence Detail 493 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR028128 Vasculin family
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 5
Other
Accession IDs
less
MGI:2145353, MGI:2443761
References
more
  • Summaries
    All 32
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory