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Ptchd4 Gene Detail
Summary
  • Symbol
    Ptchd4
  • Name
    patched domain containing 4
  • Synonyms
    3110082D06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920485
    NCBI Gene: 627626
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:42315947-42505077 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 19.65 cM, cytoband C
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1206 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920485
protein coding gene Chr17:42315812-42507742 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023766
protein coding gene Chr17:43134136-43342811 (+)
A/J MGP_AJ_G0023724
protein coding gene Chr17:42169054-42379065 (+)
AKR/J MGP_AKRJ_G0023695
protein coding gene Chr17:42339474-42546679 (+)
BALB/cJ MGP_BALBcJ_G0023728
protein coding gene Chr17:42073594-42278006 (+)
C3H/HeJ MGP_C3HHeJ_G0023492
protein coding gene Chr17:43045975-43250920 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024170
protein coding gene Chr17:45029873-45235134 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021621
protein coding gene Chr17:39087450-39276862 (+)
CAST/EiJ MGP_CASTEiJ_G0022973
protein coding gene Chr17:43037330-43239810 (+)
CBA/J MGP_CBAJ_G0023468
protein coding gene Chr17:46666199-46881164 (+)
DBA/2J MGP_DBA2J_G0023594
protein coding gene Chr17:40997729-41194026 (+)
FVB/NJ MGP_FVBNJ_G0023561
protein coding gene Chr17:40559404-40750774 (+)
LP/J MGP_LPJ_G0023675
protein coding gene Chr17:43794353-44007318 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023590
protein coding gene Chr17:46320619-46531215 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024216
protein coding gene Chr17:42667429-42883217 (+)
PWK/PhJ MGP_PWKPhJ_G0022718
protein coding gene Chr17:40139239-40438521 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022533
protein coding gene Chr17:39595861-39809746 (+)
WSB/EiJ MGP_WSBEiJ_G0023038
protein coding gene Chr17:43211056-43416529 (+)



Homology
more
  • Human Ortholog
    PTCHD4, patched domain containing 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PTCHD4, patched domain containing 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf138, dJ402H5.2, PTCH53
  • Links
    NCBI Gene ID: 442213
    neXtProt AC: NX_Q6ZW05
    UniProt: Q6ZW05

  • Chr Location
    6p12.3; chr6:47858598-48111132 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000042256 Ensembl Gene Model | MGI Sequence Detail 189131 C57BL/6J ±  kb
transcript ENSMUST00000232968 Ensembl | MGI Sequence Detail 3918 Not Applicable  
polypeptide ENSMUSP00000156770 Ensembl | MGI Sequence Detail 904 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR003392 Protein patched/dispatched
    IPR000731 Sterol-sensing domain
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
Other
Accession IDs
less
MGI:2685167
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory