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3110043O21Rik
Gene Detail
Symbol

Name
ID
3110043O21Rik
RIKEN cDNA 3110043O21 gene
MGI:1920455
Synonyms
C9orf72
Feature Type
protein coding gene
Genetic Map
Chromosome 4
17.13 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:35191285-35226175 bp, - strand
From VEGA annotation of GRCm38

  34891 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10137  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: 3110043O21Rik

Human
homologs
Human Homolog C9orf72, chromosome 9 open reading frame 72
NCBI Gene ID 203228
neXtProt AC  NX_Q96LT7
Human Synonyms  ALSFTD, FTDALS
Human Chr (Location)  9p21.2; chr9:27546545-27573866 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human C9orf72
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Endonuclease-mediated(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
3110043O21Rik interacts with 241 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process autophagy, endocytosis
Component autophagic vacuole, cytoplasm, ...
Function protein binding, Rab GTPase binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (57)    Tissues (11)    Images (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 57
cDNA source data(47)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(47) cDNA(47)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000006496 (Evidence)
Ensembl Gene ModelENSMUSG00000028300 (Evidence)
Entrez Gene73205 (Evidence)
UniGene331544
DFCITC1578391, TC1591228
DoTSDT.101294758, DT.489803, DT.99850340
NIA Mouse Gene IndexU024941
Consensus CDS ProjectCCDS38708.1
International Mouse Knockout Project Status3110043O21Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006496 VEGA Gene Model | MGI Sequence Detail 34891 C57BL/6J ±  kb
transcript OTTMUST00000014849 VEGA | MGI Sequence Detail 3193 Not Applicable 
polypeptide OTTMUSP00000006892 VEGA | MGI Sequence Detail 481 Not Applicable 

For the selected sequences
All sequences(53) RefSeq(9) UniProt(5)
Polymorphisms
SNPs within 2kb(421 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:206933 Farg MA, et al., C9ORF72, implicated in amytrophic lateral sclerosis and frontotemporal dementia, regulates endosomal trafficking. Hum Mol Genet. 2014 Feb 27;
All references(31)
Other
accession IDs
MGI:2140370

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory