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Clec4a3 Gene Detail
Summary
  • Symbol
    Clec4a3
  • Name
    C-type lectin domain family 4, member a3
  • Synonyms
    3110037K17Rik, mDcir3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920399
    NCBI Gene: 73149
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:122952515-122969875 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 58.04 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    156 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920399
protein coding gene Chr6:122952515-122969878 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031237
protein coding gene Chr6:126077100-126089190 (+)
A/J MGP_AJ_G0031206
protein coding gene Chr6:121296186-121310392 (+)
AKR/J MGP_AKRJ_G0031136
protein coding gene Chr6:124656022-124672680 (+)
BALB/cJ MGP_BALBcJ_G0031216
protein coding gene Chr6:121011352-121022281 (+)
C3H/HeJ MGP_C3HHeJ_G0030935
protein coding gene Chr6:124621075-124638021 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031675
protein coding gene Chr6:129412323-129426231 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028831
protein coding gene Chr6:117900213-117910416 (+)
CAST/EiJ MGP_CASTEiJ_G0030324
protein coding gene Chr6:124886527-124896533 (+)
CBA/J MGP_CBAJ_G0030898
protein coding gene Chr6:134445626-134468756 (+)
DBA/2J MGP_DBA2J_G0031054
protein coding gene Chr6:120234510-120247968 (+)
FVB/NJ MGP_FVBNJ_G0031007
protein coding gene Chr6:119168284-119186071 (+)
LP/J MGP_LPJ_G0031135
protein coding gene Chr6:126267926-126279282 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031042
protein coding gene Chr6:138409665-138424278 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031705
protein coding gene Chr6:124545170-124562323 (+)
PWK/PhJ MGP_PWKPhJ_G0030038
protein coding gene Chr6:119067266-119078597 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029866
protein coding gene Chr6:122691523-122701696 (+)
WSB/EiJ MGP_WSBEiJ_G0030406
protein coding gene Chr6:124856697-124866760 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000043832 Ensembl Gene Model | MGI Sequence Detail 17361 C57BL/6J ±  kb
transcript ENSMUST00000117173 Ensembl | MGI Sequence Detail 1165 Not Applicable  
polypeptide ENSMUSP00000112716 Ensembl | MGI Sequence Detail 237 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR001969 Aspartic peptidase, active site
    IPR033989 CD209-like, C-type lectin-like domain
    IPR018378 C-type lectin, conserved site
    IPR016187 C-type lectin fold
    IPR001304 C-type lectin-like
    IPR016186 C-type lectin-like/link domain superfamily
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/05/2019
MGI 6.14
The Jackson Laboratory