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Abracl Gene Detail
Summary
  • Symbol
    Abracl
  • Name
    ABRA C-terminal like
  • Synonyms
    1700028I04Rik, 3110003A17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920362
    NCBI Gene: 73112
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:17887008-17899000 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 7.39 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920362
 protein coding gene Chr10:17887008-17899036 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017034
 protein coding gene Chr10:15674989-15688079 (-)
A/J MGP_AJ_G0017012
 protein coding gene Chr10:15070904-15084829 (-)
AKR/J MGP_AKRJ_G0016976
 protein coding gene Chr10:15307266-15321929 (-)
BALB/cJ MGP_BALBcJ_G0016970
 protein coding gene Chr10:15144201-15155939 (-)
C3H/HeJ MGP_C3HHeJ_G0016795
 protein coding gene Chr10:15644587-15657780 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017432
 protein coding gene Chr10:16057243-16069117 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015137
 protein coding gene Chr10:13992419-14002893 (-)
CAST/EiJ MGP_CASTEiJ_G0016377
 protein coding gene Chr10:15444412-15455951 (-)
CBA/J MGP_CBAJ_G0016767
 protein coding gene Chr10:16777139-16794176 (-)
DBA/2J MGP_DBA2J_G0016875
 protein coding gene Chr10:14972707-14984515 (-)
FVB/NJ MGP_FVBNJ_G0016870
 protein coding gene Chr10:14730650-14745665 (-)
LP/J MGP_LPJ_G0016950
 protein coding gene Chr10:15490490-15517560 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016900
 protein coding gene Chr10:17132144-17146554 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017470
 protein coding gene Chr10:15288898-15300741 (-)
PWK/PhJ MGP_PWKPhJ_G0016162
 protein coding gene Chr10:14787108-14798945 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015945
 protein coding gene Chr10:15455291-15466904 (-)
WSB/EiJ MGP_WSBEiJ_G0016439
 protein coding gene Chr10:15356080-15368577 (-)



Homology
more
  • Human Ortholog
    ABRACL, ABRA C-terminal like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ABRACL, ABRA C-terminal like
  • Synonyms
    C6orf115, Costars, HSPC280, PRO2013
  • Links
    NCBI Gene ID: 58527
    neXtProt AC: NX_Q9P1F3
    UniProt: Q9P1F3

  • Chr Location
    6q24.1; chr6:139028745-139043302 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    4
  • Targeted
    2
  • Genomic Mutations
    1 involving Abracl
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    14 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    807
  • Tissues
    98
  • cDNA Data
    53
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73112 NCBI Gene Model | MGI Sequence Detail 11993 C57BL/6J ±  kb
transcript NM_028440 RefSeq | MGI Sequence Detail 826 C57BL/6  
polypeptide Q4KML4 UniProt | EBI | MGI Sequence Detail 81 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 56
    cDNA 53
    Primer pair 2
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919503
References
more
  • Summaries
    All 41
    Developmental Gene Expression 6
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:341392 Troumpoukis D, et al., Characterization of the Abracl-Expressing Cell Populations in the Embryonic Mammalian Telencephalon. Biomolecules. 2023 Aug 31;13(9)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory