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Abracl Gene Detail
Summary
  • Symbol
    Abracl
  • Name
    ABRA C-terminal like
  • Synonyms
    1700028I04Rik, 3110003A17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920362
    NCBI Gene: 73112
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:18011260-18023252 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 7.39 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920362
protein coding gene Chr10:18011260-18023288 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017034
protein coding gene Chr10:15674989-15688079 (-)
A/J MGP_AJ_G0017012
protein coding gene Chr10:15070904-15084829 (-)
AKR/J MGP_AKRJ_G0016976
protein coding gene Chr10:15307266-15321929 (-)
BALB/cJ MGP_BALBcJ_G0016970
protein coding gene Chr10:15144201-15155939 (-)
C3H/HeJ MGP_C3HHeJ_G0016795
protein coding gene Chr10:15644587-15657780 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017432
protein coding gene Chr10:16057243-16069117 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015137
protein coding gene Chr10:13992419-14002893 (-)
CAST/EiJ MGP_CASTEiJ_G0016377
protein coding gene Chr10:15444412-15455951 (-)
CBA/J MGP_CBAJ_G0016767
protein coding gene Chr10:16777139-16794176 (-)
DBA/2J MGP_DBA2J_G0016875
protein coding gene Chr10:14972707-14984515 (-)
FVB/NJ MGP_FVBNJ_G0016870
protein coding gene Chr10:14730650-14745665 (-)
LP/J MGP_LPJ_G0016950
protein coding gene Chr10:15490490-15517560 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016900
protein coding gene Chr10:17132144-17146554 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017470
protein coding gene Chr10:15288898-15300741 (-)
PWK/PhJ MGP_PWKPhJ_G0016162
protein coding gene Chr10:14787108-14798945 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015945
protein coding gene Chr10:15455291-15466904 (-)
WSB/EiJ MGP_WSBEiJ_G0016439
protein coding gene Chr10:15356080-15368577 (-)



Homology
more
  • Human Ortholog
    ABRACL, ABRA C-terminal like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ABRACL, ABRA C-terminal like
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C6orf115, Costars, HSPC280, PRO2013
  • Links
    NCBI Gene ID: 58527
    neXtProt AC: NX_Q9P1F3
    UniProt: Q9P1F3

  • Chr Location
    6q24.1; chr6:139028682-139043302 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 64011
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ABRACL
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Gene trapped
    6
  • Targeted
    2
  • Genomic Mutations
    1 involving Abracl
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 73112 NCBI Gene Model | MGI Sequence Detail 11993 C57BL/6J ±  kb
transcript NM_028440 RefSeq | MGI Sequence Detail 826 C57BL/6  
polypeptide Q4KML4 UniProt | EBI | MGI Sequence Detail 81 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR027817 Costars domain
    IPR038095 Costars domain superfamily
Molecular
Reagents
less
  • All nucleic 56
    cDNA 53
    Primer pair 2
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919503
References
more
  • Summaries
    All 37
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 12
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/11/2018
MGI 6.13
The Jackson Laboratory