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Kantr Gene Detail
Summary
  • Symbol
    Kantr
  • Name
    Kdm5c adjacent non-coding transcript
  • Synonyms
    2810454L23Rik, 2900056M20Rik, Spasm
Location &
Maps
more
  • Sequence Map
    ChrX:152294828-152327495 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 68.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920247
lncRNA gene ChrX:152294824-152327495 (-)
129S1/SvImJ MGP_129S1SvImJ_G0007571
lincRNA gene ChrX:150063146-150096065 (-)
A/J MGP_AJ_G0007569
lincRNA gene ChrX:149251595-149277575 (-)
AKR/J MGP_AKRJ_G0007540
lincRNA gene ChrX:154093172-154120749 (-)
BALB/cJ MGP_BALBcJ_G0007544
lincRNA gene ChrX:147439346-147466353 (-)
C3H/HeJ MGP_C3HHeJ_G0007491
lincRNA gene ChrX:150279855-150306223 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007717
lincRNA gene ChrX:154336976-154366947 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006892
lincRNA gene ChrX:140938772-140968074 (-)
CAST/EiJ MGP_CASTEiJ_G0007393
lincRNA gene ChrX:129698117-129726305 (-)
CBA/J MGP_CBAJ_G0007472
lincRNA gene ChrX:158877380-158909279 (-)
DBA/2J MGP_DBA2J_G0007497
lincRNA gene ChrX:148314480-148341911 (-)
FVB/NJ MGP_FVBNJ_G0007513
lincRNA gene ChrX:147450279-147478113 (-)
LP/J MGP_LPJ_G0007577
lincRNA gene ChrX:151168629-151195211 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0007492
lincRNA gene ChrX:167032344-167059145 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007720
lincRNA gene ChrX:149593080-149621609 (-)
PWK/PhJ MGP_PWKPhJ_G0007330
lincRNA gene ChrX:126638273-126664083 (-)
SPRET/EiJ MGP_SPRETEiJ_G0007234
lincRNA gene ChrX:130156791-130182387 (-)
WSB/EiJ MGP_WSBEiJ_G0007454
lincRNA gene ChrX:147642339-147672003 (-)



Homology
more
  • Human Ortholog
    KANTR, KDM5C adjacent transcript
  • Human Ortholog
    KANTR, KDM5C adjacent transcript
    Orthology source: HGNC
  • Synonyms
    LINC01155, Spasm
  • Links
    NCBI Gene ID: 102723508

  • Chr Location
    chrX:53094157-53144072 (+)  GRCh38.p7

  • HCOP
    human homology predictions: KANTR
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation exhibit tremors and a propensity to develop spastic movements when handled.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087403 Ensembl Gene Model | MGI Sequence Detail 32668 C57BL/6J ±  kb
transcript ENSMUST00000195280 Ensembl | MGI Sequence Detail 4212 Not Applicable  
polypeptide ENSMUSP00000151626 Ensembl | MGI Sequence Detail 76 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 30
    cDNA 30

    Microarray probesets 3
Other
Accession IDs
less
MGI:1920053
References
more
  • Summaries
    All 19
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:233815 Lai KM, et al., Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs. PLoS One. 2015;10(4):e0125522

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/07/2020
MGI 6.14
The Jackson Laboratory