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Chmp1a Gene Detail
Summary
  • Symbol
    Chmp1a
  • Name
    charged multivesicular body protein 1A
  • Synonyms
    2900018H07Rik, chromatin modifying protein 1A, Pcoln3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920159
    NCBI Gene: 234852
  • Gene Overview
    MyGene.info: CHMP1A
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:123204264-123212763 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 72.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    134 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920159
protein coding gene Chr8:123204261-123212788 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034245
protein coding gene Chr8:126797172-126807582 (-)
A/J MGP_AJ_G0034225
protein coding gene Chr8:121549684-121558395 (-)
AKR/J MGP_AKRJ_G0034152
protein coding gene Chr8:125083074-125091012 (-)
BALB/cJ MGP_BALBcJ_G0034219
protein coding gene Chr8:121759562-121767980 (-)
C3H/HeJ MGP_C3HHeJ_G0033929
protein coding gene Chr8:125782147-125792157 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034738
protein coding gene Chr8:131041659-131054121 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031680
protein coding gene Chr8:114365348-114373196 (-)
CAST/EiJ MGP_CASTEiJ_G0033257
protein coding gene Chr8:125861606-125871146 (-)
CBA/J MGP_CBAJ_G0033902
protein coding gene Chr8:135846222-135859406 (-)
DBA/2J MGP_DBA2J_G0034059
protein coding gene Chr8:120727557-120737002 (-)
FVB/NJ MGP_FVBNJ_G0034002
protein coding gene Chr8:119892174-119901008 (-)
LP/J MGP_LPJ_G0034148
protein coding gene Chr8:126933010-126940950 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034049
protein coding gene Chr8:137995359-138003667 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034757
protein coding gene Chr8:125293580-125301706 (-)
PWK/PhJ MGP_PWKPhJ_G0032958
protein coding gene Chr8:120562075-120569983 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032798
protein coding gene Chr8:124006938-124014174 (-)
WSB/EiJ MGP_WSBEiJ_G0033373
protein coding gene Chr8:126027082-126036399 (-)



Homology
more
  • Human Ortholog
    CHMP1A, charged multivesicular body protein 1A
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CHMP1A, charged multivesicular body protein 1A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CHMP1, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A
  • Links
    NCBI Gene ID: 5119
    neXtProt AC: NX_Q9HD42
    UniProt: Q9HD42

  • Chr Location
    16q24.3; chr16:89644431-89657785 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human CHMP1A associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000000743 Ensembl Gene Model | MGI Sequence Detail 8500 C57BL/6J ±  kb
transcript ENSMUST00000000759 Ensembl | MGI Sequence Detail 2140 Not Applicable  
polypeptide ENSMUSP00000000759 Ensembl | MGI Sequence Detail 196 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 165
    cDNA 165

    Microarray probesets 3
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:47659 Sasaki N, et al., Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones. (Errata 1998;54:583). Genomics. 1998 Apr 15;49(2):167-79
  • Latest
    J:249066 Gompers AL, et al., Germline Chd8 haploinsufficiency alters brain development in mouse. Nat Neurosci. 2017 Aug;20(8):1062-1073

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory