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Chmp1a
Gene Detail
Symbol

Name
ID
Chmp1a
charged multivesicular body protein 1A
MGI:1920159
Synonyms
2900018H07Rik, chromatin modifying protein 1A, Pcoln3
Feature Type
protein coding gene
Genetic Map
Chromosome 8
72.08 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr8:123204264-123212763 bp, - strand
From VEGA annotation of GRCm38

  8500 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56240  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: CHMP1A
Protein SuperFamily: ESCRT-3 complex, Chmp1/Chmp2/Chmp3 subunits
Gene Tree: Chmp1a

Human
homologs
CHMP1A, charged multivesicular body protein 1A
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 5119
neXtProt AC: NX_Q9HD42

Human Synonyms: CHMP1, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A

Human Chr (Location): 16q24.3; chr16:89644431-89657785 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human CHMP1A

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(5) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Chmp1a interacts with 169 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (31 annotations)
Process cell cycle, cell division, ...
Component condensed nuclear chromosome, cytoplasm, ...
Function protein binding, protein domain specific binding, ...
External Resources: FuncBase
Expression
cDNA source data(164)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase chmp1a    NEW 
Molecular
reagents
All nucleic(164) cDNA(164)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000036037 (Evidence)
Ensembl Gene Model ENSMUSG00000000743 (Evidence)
Entrez Gene 234852 (Evidence)
UniGene 41596
DFCI TC1573474
DoTS DT.101321070, DT.101331017, DT.492976
NIA Mouse Gene Index U030370, U066750
Consensus CDS Project CCDS40509.1
International Mouse Phenotyping Consortium Status Chmp1a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036037 VEGA Gene Model | MGI Sequence Detail 8500 C57BL/6J ±  kb
transcript OTTMUST00000092503 VEGA | MGI Sequence Detail 2140 Not Applicable 
polypeptide OTTMUSP00000051142 VEGA | MGI Sequence Detail 196 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(134 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005024 Snf7
Protein Ontology PR:000005432 charged multivesicular body protein 1a
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory