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Chmp1a
Gene Detail
 Symbol
Name
ID
Chmp1a
charged multivesicular body protein 1A
MGI:1920159
Synonyms 2900018H07Rik, chromatin modifying protein 1A, Pcoln3
Feature Type protein coding gene
Genetic Map
Chromosome 8
72.08 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr8:123204264-123212763 bp, - strand
From VEGA annotation of GRCm38

  8500 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56240  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: ESCRT-3 complex, Chmp1/Chmp2/Chmp3 subunits
Gene Tree: Chmp1a

Human
homologs
Human Homolog CHMP1A, charged multivesicular body protein 1A
NCBI Gene ID 5119
neXtProt AC  NX_Q9HD42
Human Synonyms  CHMP1, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A
Human Chr (Location)  16q24.3; chr16:89644431-89657785 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human CHMP1A
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(5) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Chmp1a interacts with 169 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (26 annotations)
Process cell cycle, cell division, ...
Component condensed nuclear chromosome, cytoplasm, ...
Function protein binding, protein domain specific binding, ...
External Resources: FuncBase
Expression
cDNA source data(164)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(164) cDNA(164)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000036037 (Evidence)
Ensembl Gene ModelENSMUSG00000000743 (Evidence)
Entrez Gene234852 (Evidence)
UniGene41596
DFCITC1573474
DoTSDT.101321070, DT.101331017, DT.492976
NIA Mouse Gene IndexU030370, U066750
Consensus CDS ProjectCCDS40509.1
International Mouse Knockout Project StatusChmp1a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036037 VEGA Gene Model | MGI Sequence Detail 8500 C57BL/6J ±  kb
transcript OTTMUST00000092503 VEGA | MGI Sequence Detail 2140 Not Applicable 
polypeptide OTTMUSP00000051142 VEGA | MGI Sequence Detail 196 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(134 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005024 Snf7
Protein Ontology PR:000005432 charged multivesicular body protein 1a
References (Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory