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Ccdc13 Gene Detail
Summary
  • Symbol
    Ccdc13
  • Name
    coiled-coil domain containing 13
  • Synonyms
    2900041A11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920144
    NCBI Gene: 100502861
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121797627-121839461 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 72.63 cM, cytoband F4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    294 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920144
 protein coding gene Chr9:121797624-121839515 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035451
 protein coding gene Chr9:124758039-124804548 (-)
A/J MGP_AJ_G0035432
 protein coding gene Chr9:120003673-120046841 (-)
AKR/J MGP_AKRJ_G0035365
 protein coding gene Chr9:123202084-123250535 (-)
BALB/cJ MGP_BALBcJ_G0035428
 protein coding gene Chr9:119912373-119957897 (-)
C3H/HeJ MGP_C3HHeJ_G0035135
 protein coding gene Chr9:123662111-123710274 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035951
 protein coding gene Chr9:128174073-128218427 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032833
 protein coding gene Chr9:117166300-117207218 (-)
CAST/EiJ MGP_CASTEiJ_G0034440
 protein coding gene Chr9:123697935-123748815 (-)
CBA/J MGP_CBAJ_G0035103
 protein coding gene Chr9:132860176-132906227 (-)
DBA/2J MGP_DBA2J_G0035262
 protein coding gene Chr9:119447161-119492470 (-)
FVB/NJ MGP_FVBNJ_G0035209
 protein coding gene Chr9:118366225-118412139 (-)
LP/J MGP_LPJ_G0035341
 protein coding gene Chr9:125096129-125140924 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035250
 protein coding gene Chr9:133803550-133847587 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035970
 protein coding gene Chr9:123644190-123683518 (-)
PWK/PhJ MGP_PWKPhJ_G0034144
 protein coding gene Chr9:119907065-119951829 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033981
 protein coding gene Chr9:123764564-123815335 (-)
WSB/EiJ MGP_WSBEiJ_G0034560
 protein coding gene Chr9:123494583-123532555 (-)



Homology
more
  • Human Ortholog
    CCDC13, coiled-coil domain containing 13
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CCDC13, coiled-coil domain containing 13
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 152206
    neXtProt AC: NX_Q8IYE1
    UniProt: Q8IYE1

  • Chr Location
    3p22.1; chr3:42704118-42773253 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 87213
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CCDC13
  • Gene Tree
    Ccdc13
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    8
  • Tissues
    1
  • cDNA Data
    15
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079235 Ensembl Gene Model | MGI Sequence Detail 41835 C57BL/6J ±  kb
transcript ENSMUST00000135986 Ensembl | MGI Sequence Detail 2640 Not Applicable  
polypeptide ENSMUSP00000114787 Ensembl | MGI Sequence Detail 709 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 1
Other
Accession IDs
less
MGI:2685034
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/15/2019
MGI 6.14 		The Jackson Laboratory